Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0555 ATGTTGTTACTTGAATCTTGCAGGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGGACATTCAATGTGGTGGGAAATCCATTGATTTGTGGAAGTAGTCCTAGTGAAGGTTGCTCTGGCTCAGCCTATGCGGTTCCTCTTTCTTTCGCTCTCGAATCGACCCCTGGTAGACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGCTGTGCTTTTCTGATACTCTTAGCACTTGGAATTATTTGGCGAAGAAGAAATCACAAGACCAAAACCATCCTAGACATCAATGTAAACAATCAAGAAGTTGGACTTGTGCGCTTAGGCAACCTGAGGAACTTCAGTTTCAAAGAGCTGCAGTTAGCAACAGATCATTTTAGTTCCAAACATATACTTGGGGCTGGAGGATTTGGTAATGTATACAAGGGAAAGCTCGGAGATGGGACTACGGTGGCTGTGAAACGGCTTAAAGATGTCACAGGTACAACCGGAGAGTCGCAATTTCGCACCGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTATCCATACATGTCAAATGGCAGTGTAGCTTCCAGACTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCCATTGGAGCTGCAAGGGGTCTGCTCTACCTCCACGAGCAATGTGATCCCAAGATAATCCATAGAGATGTTAAGGCGGCCAATGTGCTTCTAGATGACTTTTGCGAAGCTGTCGTTGGTGATTTCGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCTGTTCGTGGCACGGTTGGGCACATCGCTCCGGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGACGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGAATGAGAGCCCTTGAGTTTGGGAAAACAATCAACCAAAAAGGAGCTGTGCTTGAGCGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTAGACAAAGAGCTAGGGAACAACTATGATCAGATAGAAGTTGGGGAAATGTTACAAGTAGCTCTTCTATGCACTCAGTATTTACCTGCTCATCGTCCCAAGATGTCGGAGGTGGTCCGGATGCTTGAAGGCGATGGCCTTGTTGAGAAATGGGCTGCATCCCACACTCAGAATGACCTAAATGTCAACCTCTTTCATACACGAAACAGCTGCAAAAGTGCATACAACCCCACAAATGCATTCAATGGCAATGATAGGGAACATTCAAGCATGTTAAGTTTGTCAATGGACGATGACGACGAACGATCATTGGACTCCTTTGCCATGGAACTATCAGGTCCAAGGTAG 1431 45.91 MLLLESCRDLSFNNLSGPVPVFPARTFNVVGNPLICGSSPSEGCSGSAYAVPLSFALESTPGRLRSKRIAVALGVSLSCAFLILLALGIIWRRRNHKTKTILDINVNNQEVGLVRLGNLRNFSFKELQLATDHFSSKHILGAGGFGNVYKGKLGDGTTVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAVLERVKKIQQEKKVELLVDKELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTQNDLNVNLFHTRNSCKSAYNPTNAFNGNDREHSSMLSLSMDDDDERSLDSFAMELSGPR 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3707909 3711265 - Sed0010315.2 Sed08g0555 722331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0555 476 FunFam Somatic embryogenesis receptor kinase 1 103 210 - -
Sed08g0555 476 SMART serkin_6 134 403 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0555 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0555 476 CDD TM_EGFR-like 66 99 - -
Sed08g0555 476 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 476 - -
Sed08g0555 476 ProSitePatterns Protein kinases ATP-binding region signature. 140 162 IPR017441 GO:0005524(InterPro)
Sed08g0555 476 Gene3D Transferase(Phosphotransferase) domain 1 211 423 - -
Sed08g0555 476 ProSiteProfiles Protein kinase domain profile. 134 409 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0555 476 MobiDBLite consensus disorder prediction 437 451 - -
Sed08g0555 476 Gene3D Phosphorylase Kinase; domain 1 103 210 - -
Sed08g0555 476 SUPERFAMILY Protein kinase-like (PK-like) 113 404 IPR011009 -
Sed08g0555 476 FunFam Somatic embryogenesis receptor-like kinase 1 211 423 - -
Sed08g0555 476 MobiDBLite consensus disorder prediction 437 459 - -
Sed08g0555 476 Pfam Protein tyrosine and serine/threonine kinase 137 403 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0555 Sed-Chr8:3707909 Sed12g2260 Sed-Chr12:32916373 2.50E-239 dispersed
Sed08g0554 Sed-Chr8:3707909 Sed08g0555 Sed-Chr8:3707909 1.00E-259 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79598 PF07714 PK_Tyr_Ser-Thr 6.60E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0555 - - - 0.0