Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0558 ATGGGGAAATCCACGTTGTCCCAACAAGCTGTTCAGATTAGGGACTTGAACAACAACAATGTAAATAAAGGCAATGATAATGTGAATGTGATGAAGACCAAAACGAAGCGAACTCGGAGGAGCGTCCCCCGAGATTCTCCGCCTCAACGAAGCTCCATTTACCGCGGTGTTACTAGGCATCGGTGGACTGGGAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCCCAGAACAAGAAAGGCAGACAAGTTTATCTTGGTGCATACGACGATGAGGAAGCAGCAGCCCATGCTTACGACCTTGCAGCATTGAAATATTGGGGTCCAGAAACCATTCTTAATTTTCCGCTGACGACTTACCAAAAAGAGCTGAAGGAAATGGAAAGCCAATCAAGAGAAGAATATATTGGGTCGTTAAGAAGAAAAAGTAGTGGGTTTTCTCGTGGGGTTTCAAAATATAGAGGCGTTGCAAGACATCATCACAATGGAAGATGGGAAGCTAGGATTGGTAGGGTTTTTGGCAACAAGTATCTCTATCTTGGAACATATGCAACGCAAGAAGAAGCAGCGACAGCGTACGACATCGCGGCAATAGAATACAGAGGACTTAACGCCGTCACAAATTTCGACCTAAGCCGTTACATAAAGTGGCTAAAGCCGTCAAACGACGTCGTTTGCGACAACAACCATCTCTTAAACGCCGAATCCATGATCCTCCCAAGCCCCAAACAAGAACTCGACCCAATCAAAATCGGCGCCGATTCGGCGCTGCCGGAGCCGATTTCCTTGCCTCCGCCGTCGCACCGGTTGGCGACCTCCACGACGGCGCTCGGCCTCCTGCTCCAGTCCTCCAAGTTCAAGGAAATGATGGAGAGGAACTCGGCGGCGGAGTGTCCGTCGACGCCGTCGGCGGCGGAGCACACGACGGAGCAGCGGCGGCGGTGTTTGTTTCCCGATGATGTACAGACTTTCTTCGCCTGTGATGGATCTGGATCTTACTGTTACGGAGAAGCGGATGATGCGATTTTTAGCGATTTTAATTCTTTTGCGCCGCCGCCGCCGCTGTCGCATTACGAATTTGACGATTAG 1098 49.64 MGKSTLSQQAVQIRDLNNNNVNKGNDNVNVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGPETILNFPLTTYQKELKEMESQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVCDNNHLLNAESMILPSPKQELDPIKIGADSALPEPISLPPPSHRLATSTTALGLLLQSSKFKEMMERNSAAECPSTPSAAEHTTEQRRRCLFPDDVQTFFACDGSGSYCYGEADDAIFSDFNSFAPPPPLSHYEFDD 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3755793 3759613 - Sed0017812.1 Sed08g0558 722334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0558 365 Pfam AP2 domain 154 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 Pfam AP2 domain 54 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 FunFam AP2-like ethylene-responsive transcription factor 52 121 - -
Sed08g0558 365 SUPERFAMILY DNA-binding domain 52 120 IPR016177 GO:0003677(InterPro)
Sed08g0558 365 CDD AP2 154 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 PRINTS Ethylene responsive element binding protein signature 195 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 ProSiteProfiles AP2/ERF domain profile. 155 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 246 - -
Sed08g0558 365 Gene3D AP2/ERF domain 53 121 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 Gene3D AP2/ERF domain 154 215 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 FunFam AP2-like ethylene-responsive transcription factor 154 215 - -
Sed08g0558 365 SMART rav1_2 53 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 SMART rav1_2 155 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 ProSiteProfiles AP2/ERF domain profile. 53 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0558 365 SUPERFAMILY DNA-binding domain 154 215 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0843 Sed-Chr2:46049876 Sed08g0558 Sed-Chr8:3755793 5.40E-55 dispersed
Sed06g0607 Sed-Chr6:5404720 Sed08g0558 Sed-Chr8:3755793 7.00E-78 dispersed
Sed07g2157 Sed-Chr7:37124260 Sed08g0558 Sed-Chr8:3755793 2.90E-76 dispersed
Sed08g0558 Sed-Chr8:3755793 Sed09g1410 Sed-Chr9:37972345 8.20E-113 dispersed
Sed08g0558 Sed-Chr8:3755793 Sed06g1959 Sed-Chr6:43759643 2.40E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39291 PF00847 AP2 3.20E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0558 K09285 - csv:101219103 574.318