Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0569 ATGGAAGCCAGCGCTGGACTTGTTGCTGGGTCTCACAACCGCAACGAGCTTGTTGTCATTCACGGCCATGAGGAGCCGAAACTGTTGAAGAACTTGGATGGTCAAGTTTGTGAAATCTGTGGTGATCAAGTGGGGCTTACTGTGGATGGTGATTTGTTTGTTGCCTGTAATGAATGTGGTTTTCCAGTCTGCAGGCCTTGTTATGAGTATGAAAGAAGAGAAGGAGGCCAGCTTTGTCCACAGTGTAAAACTAGATATAAGCGGCTCAAAGGGAGTCCAAGAGTCGAGGGAGATGACGACGAAGAAGACATAGATGACATTGAACATGAATTCAACATTGATGATGAGAGGAACAATCACAGTCATATGGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGTCCAGATGATGATGAAAATGCACAGTATGGAAGAACACAGCCAGAAAATGGTGAGCTTCCTTTATCATCACAAGGTTATGGAGATCAGATGTTATCTTCTTCCCTCCACAAACGAGTGCATCCATATCCAGTTTCTGAATCAGGGAGTGCAAGATGGGATGAAAGGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAACAAGGCAATCTTGGGCCTGAACCTGATGATCCCAATGACCCTGACATGATTGATGCAGCCAGACAGCCACTATCAAGGAAGGTACCAATAGCATCTAGCAAAATTAATCCTTACCGGATGATTATTGTGGCTCGGCTTGCTATTCTCGCCCTCTTCCTTCGGTATCGGATCCTAAATCCAGTGCATGACGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAGATCTGGTTTGCATTTTCATGGATCCTTGATCAGTTCCCCAAATGGTTCCCAAACGATCGGGAAACCTACTTGGATCGTCTATCCCTCAGGTATGAACGAGAGGGTGAACCTAATTTGCTAGCTCCAGTGGACATCTTCGTTAGTACTGTGGATCCGATGAAGGAACCTCCCCTTGTAACAGCTAACACGATTTTATCGATCTTGGCGATGGACTATCCAGTTGATAAGACATCTTGCTATGTTTCTGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTTCCAGGAAATGGGTCCCTTTTTGTAAGAAGTTTTCCATAGAACCACGAGCACCTGAAATGTATTTTTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTAAAGGAGCGCCGTGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCTCAAGTAGCAAAAGCCATAAAAGTTCCAGCGGAAGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTTGGTCACAGTGGAGGCCTTGATGCAGAAGGGAATGAACTCCCTCGCCTGGTTTACGTATCACGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAAGCCGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCACCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAGGCCATGTGTTTCCTTATGGATCCTCAAGTTGGAAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGACGGAATAGATAGGCATGATCGTTATGCCAACAGAAATACAGTTTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGTCCTGTGTATGTCGGCACAGGGTGCGTCTTTAGGAGGCAAGCTTTATATGGATATGAACCACCTAAAGGTCCTAAGCGCCCAAAAATGGTAAGTTGTGACTGTTGTCCATGTTTTGGACGTCGCAAGAAGCTTAAAAGCTCCAAAAGTGGGGTCAATGGAGATGCTGCTGTGATGGAAGATGACAAGGAGCTACTAATGTCACAAATGAATTTCGAAAAGAAATTTGGACAGTCATCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCACCCTCCTCAGGTCCAGCGGCCCTGCTCAAGGAGGCAATTCATGTTATCAGTTGCGGTTACGAAGACAAAACCGAATGGGGTACAGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGCTTCAAGATGCATTGTCGTGGATGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCCCTTGGGTCGATCGAAATCTTTTTCAGCAACCACTGCCCTGTTTGGTATGGTTATAAGGGTGGGAATCTAAAGTGGCTCGAGAGATTTGCATATGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACTCTCCCTGCAATCTGCCTGCTCACTGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTACTTCATTTCTTTGTTTCTTTCCATTATTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTTAGCATCGAGGAATGGTGGAGAAATGAGCAGTTTTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACTGTTACATCCAAGTCAACAGATGACGAAGATTTCGGGGAATTATATGCCTTCAAATGGACCACTCTACTAATTCCTCCAACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAATGGCTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTTTGGGTGATTGTCCATCTCTACCCATTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACACCGACGATAGTCGTCATATGGTCCGTGTTGTTGGCATCAATCTTCTCCTTGCTTTGGGTCCGTATTGATCCGTTTGTGATGAAAACAAAGGGGCCTGATACCAAGAAATGTGGACTGAATTGCTGA 3093 44.16 MEASAGLVAGSHNRNELVVIHGHEEPKLLKNLDGQVCEICGDQVGLTVDGDLFVACNECGFPVCRPCYEYERREGGQLCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNNHSHMAEAMLHGKMSYGRGPDDDENAQYGRTQPENGELPLSSQGYGDQMLSSSLHKRVHPYPVSESGSARWDERREEGWKDRMDDWKLQQGNLGPEPDDPNDPDMIDAARQPLSRKVPIASSKINPYRMIIVARLAILALFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPNDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKTSCYVSDDGASMLTFEAMSETAEFSRKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAIKVPAEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKSSKSGVNGDAAVMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSGPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGNLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLYFISLFLSIIATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKSTDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3856602 3862058 + Sed0021576.1 Sed08g0569 722345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0569 1030 CDD mRING-HC-C4C4_CesA 35 85 - -
Sed08g0569 1030 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Sed08g0569 1030 Pfam Cellulose synthase 325 1024 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Sed08g0569 1030 FunFam Cellulose synthase 19 110 - -
Sed08g0569 1030 MobiDBLite consensus disorder prediction 200 219 - -
Sed08g0569 1030 SUPERFAMILY RING/U-box 22 107 - -
Sed08g0569 1030 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 431 616 IPR029044 -
Sed08g0569 1030 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Sed08g0569 1030 SUPERFAMILY Nucleotide-diphospho-sugar transferases 339 847 IPR029044 -
Sed08g0569 1030 MobiDBLite consensus disorder prediction 131 166 - -
Sed08g0569 1030 Pfam Zinc-binding RING-finger 28 103 IPR027934 -
Sed08g0569 1030 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 231 999 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Sed08g0569 1030 MobiDBLite consensus disorder prediction 147 166 - -
Sed08g0569 1030 MobiDBLite consensus disorder prediction 171 190 - -
Sed08g0569 1030 FunFam Cellulose synthase 442 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0163 Sed-Chr7:1442541 Sed08g0569 Sed-Chr8:3856602 0.00E+00 dispersed
Sed08g0569 Sed-Chr8:3856602 Sed11g1757 Sed-Chr11:32617670 0.00E+00 dispersed
Sed12g2280 Sed-Chr12:33014775 Sed08g0569 Sed-Chr8:3856602 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0569 K10999 - csv:101214842 2037.31