Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0571 ATGCAGCAAAGTGATCAGACGTTTCTAAGCTTGAGACCTGGCGGCGGCCGACCTACACTCCTTGCTCCTCTCACCACCCTCCGCCCCCATGCCGCCGCTTCTTCCCTTTCTCTCAAGGGTGGAGATTCACGGTTTGAGAGTCGTGAGCGTGTTCGATATGCTCGAGAGCAGCTTTTGCAGATTCGACAGGCTGTGAAAGTTCTAGATCATATACTGAAACTTAAACGAGACATCGAAGTGGAACTTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAAAATAGTCAGTCTCTGAATCGATATTCTGAGCCAGATAGTCGTAACTGGCGTGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGAGAGGTCCAGGGAAACAATTCGAGATAGAGATGCTGGTGGTCACTTTGACTCTAGACAAGACACAAATCAATTGAATCGTCAAGACTCAAACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGGGCCTCTGGCTTTAATCAAAGCTGAGGTACCATGGTCAGCTAGGAGAGGAAGTCTCTCTGACAAGGATCGTGTATTGAAGACTGTTAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTTGATCTCCTCAAGGGTCAGCTAATTGACTCCGGAATCACCTCTGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTCGAGCCCACATTTTGCCCCATGTATGCTCAATTGTGTTCTGATCTGAATCAGAAGCTACCTCAATTTCCCTCGGACGAACCTGGTGGAAGGGAAATTACTTTTAAACGGGTCCTCTTAAATATCTGTCAGGAAGTTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGCTTAGGCAGATGACCGCCCCTGAGCAAGAGAGCAAGCGCAGAGATAAAGAAAGACTGCTCAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAACTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTGCAGGAACTTTTAGGACCAGATAACAAAATCTGTCCTGCCGAAGAAAATGTCGAGGCCATCTGTCAGTTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACAAAATCACGTCATATAAATGATATGTACTTTGGCCGATTGAAAGAATTGACTACACACCCTCAGTTGGCCCCTCGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAAATGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACACTCAGAGGCAGAAAAAAATCTGGGATTACGTCCTGGTGCTACTGTCAATATCAGAAATAGTCGTGGTGTTGTGTCTGGTTCAACTGGGAACACCAGCCCTGGAGGCTTCCCTATTAACCGACCCGGATTTGGGGGTATGATGCCTGGCATGCCAGGAACCAGGAGAATGCCTGGTATGCCGGGAATGGATAATGACAATTGGGAGGTACCAAGGGCCCGGAAGGGGGCAGATGGATCTGGTATTCAGCCTTCTGGACGTGGTCAGACACCCTTGGTCAGCAAAGCATCAACGTTGAATGCTAGGCCTCTACCCCAGGGTACCGGTGGGCTCATTAGTAATAAGACTAGTGCTCTGTTGCAGGGTGCGGGCGCACCTACTACTCGTCCTGTCAACATCGGTCAAGGATTAGAGACCTCTGGTCAAGTTCATAAACCTATTACGGCAGCAACGATCCTTCCAGCTGCCGAGCGACCGCAGGTTCCAGCTGCATCGTTGAAACAAGATAATCTCAAAAAGAAAACTCTCTCTCTTCTTGAAGAATATTTCAGCATCCGGATTTTGGATGAAGCCTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTTAAAGAAGCCATTTCATTAGCCCTAGAGAAAAGCCCGCCGTGTGTCGAAGCAGTTGTAAAATTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTGGTGACATTGGGACCGGATGTTTGCTATATGCTTGCATGCTCGACGATGCCGGCATTGATTTGCCTAAAGCCCCAATCAATTTTGGTGAGATAATTGGGAAGCTTGTTATGTCTGGTGGTTTGGATTTTCAGGTGGTGAAGGAGGTCCTTAAGAAGGTTGAAGACGACAGGTTCAGAAAAGATATATTTGATTCTGTCTTGAAGACGATTAGCTGTAATGTGTCTGGGCAAGGATTACTGGATTCATTGGCATCCGATATCGAGGCCTGTCGAAGTCTCGAATGCTAA 2313 46.69 MQQSDQTFLSLRPGGGRPTLLAPLTTLRPHAAASSLSLKGGDSRFESRERVRYAREQLLQIRQAVKVLDHILKLKRDIEVELFGEEQSWSRGESNQNSQSLNRYSEPDSRNWRGRSAQFSASGEERSRETIRDRDAGGHFDSRQDTNQLNRQDSNSSWTRTTSNQGGGPLALIKAEVPWSARRGSLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEVFEGADKLREELRQMTAPEQESKRRDKERLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKICPAEENVEAICQFFNTIGKQLDENTKSRHINDMYFGRLKELTTHPQLAPRLKFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGATVNIRNSRGVVSGSTGNTSPGGFPINRPGFGGMMPGMPGTRRMPGMPGMDNDNWEVPRARKGADGSGIQPSGRGQTPLVSKASTLNARPLPQGTGGLISNKTSALLQGAGAPTTRPVNIGQGLETSGQVHKPITAATILPAAERPQVPAASLKQDNLKKKTLSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTAGDIGTGCLLYACMLDDAGIDLPKAPINFGEIIGKLVMSGGLDFQVVKEVLKKVEDDRFRKDIFDSVLKTISCNVSGQGLLDSLASDIEACRSLEC 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3867217 3872495 + Sed0009520.1 Sed08g0571 722347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0571 770 SMART ma3_7 605 717 IPR003891 -
Sed08g0571 770 MobiDBLite consensus disorder prediction 454 478 - -
Sed08g0571 770 FunFam Eukaryotic translation initiation factor isoform 4G-2 184 419 - -
Sed08g0571 770 Pfam MIF4G domain 193 418 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed08g0571 770 SUPERFAMILY ARM repeat 600 759 IPR016024 -
Sed08g0571 770 MobiDBLite consensus disorder prediction 125 141 - -
Sed08g0571 770 Pfam MA3 domain 605 717 IPR003891 -
Sed08g0571 770 MobiDBLite consensus disorder prediction 506 526 - -
Sed08g0571 770 Gene3D - 598 763 - -
Sed08g0571 770 MobiDBLite consensus disorder prediction 142 168 - -
Sed08g0571 770 Gene3D - 185 419 - -
Sed08g0571 770 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 85 768 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Sed08g0571 770 MobiDBLite consensus disorder prediction 454 470 - -
Sed08g0571 770 ProSiteProfiles MI domain profile. 604 726 IPR003891 -
Sed08g0571 770 MobiDBLite consensus disorder prediction 88 124 - -
Sed08g0571 770 MobiDBLite consensus disorder prediction 86 170 - -
Sed08g0571 770 SUPERFAMILY ARM repeat 187 421 IPR016024 -
Sed08g0571 770 SMART if4_15 193 418 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2118 Sed-Chr4:35355020 Sed08g0571 Sed-Chr8:3867217 5.50E-48 dispersed
Sed08g0571 Sed-Chr8:3867217 Sed09g0152 Sed-Chr9:1177059 3.20E-58 dispersed
Sed12g2281 Sed-Chr12:33023449 Sed08g0571 Sed-Chr8:3867217 0.00E+00 wgd
Sed13g1954 Sed-Chr13:24441564 Sed08g0571 Sed-Chr8:3867217 4.30E-249 wgd
Sed05g1753 Sed-Chr5:31346957 Sed08g0571 Sed-Chr8:3867217 5.30E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0571 K03260 - csv:101207520 1241.1