Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0571 | ATGCAGCAAAGTGATCAGACGTTTCTAAGCTTGAGACCTGGCGGCGGCCGACCTACACTCCTTGCTCCTCTCACCACCCTCCGCCCCCATGCCGCCGCTTCTTCCCTTTCTCTCAAGGGTGGAGATTCACGGTTTGAGAGTCGTGAGCGTGTTCGATATGCTCGAGAGCAGCTTTTGCAGATTCGACAGGCTGTGAAAGTTCTAGATCATATACTGAAACTTAAACGAGACATCGAAGTGGAACTTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAAAATAGTCAGTCTCTGAATCGATATTCTGAGCCAGATAGTCGTAACTGGCGTGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGAGAGGTCCAGGGAAACAATTCGAGATAGAGATGCTGGTGGTCACTTTGACTCTAGACAAGACACAAATCAATTGAATCGTCAAGACTCAAACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGGGCCTCTGGCTTTAATCAAAGCTGAGGTACCATGGTCAGCTAGGAGAGGAAGTCTCTCTGACAAGGATCGTGTATTGAAGACTGTTAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTTGATCTCCTCAAGGGTCAGCTAATTGACTCCGGAATCACCTCTGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTCGAGCCCACATTTTGCCCCATGTATGCTCAATTGTGTTCTGATCTGAATCAGAAGCTACCTCAATTTCCCTCGGACGAACCTGGTGGAAGGGAAATTACTTTTAAACGGGTCCTCTTAAATATCTGTCAGGAAGTTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGCTTAGGCAGATGACCGCCCCTGAGCAAGAGAGCAAGCGCAGAGATAAAGAAAGACTGCTCAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAACTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTGCAGGAACTTTTAGGACCAGATAACAAAATCTGTCCTGCCGAAGAAAATGTCGAGGCCATCTGTCAGTTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACAAAATCACGTCATATAAATGATATGTACTTTGGCCGATTGAAAGAATTGACTACACACCCTCAGTTGGCCCCTCGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAAATGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACACTCAGAGGCAGAAAAAAATCTGGGATTACGTCCTGGTGCTACTGTCAATATCAGAAATAGTCGTGGTGTTGTGTCTGGTTCAACTGGGAACACCAGCCCTGGAGGCTTCCCTATTAACCGACCCGGATTTGGGGGTATGATGCCTGGCATGCCAGGAACCAGGAGAATGCCTGGTATGCCGGGAATGGATAATGACAATTGGGAGGTACCAAGGGCCCGGAAGGGGGCAGATGGATCTGGTATTCAGCCTTCTGGACGTGGTCAGACACCCTTGGTCAGCAAAGCATCAACGTTGAATGCTAGGCCTCTACCCCAGGGTACCGGTGGGCTCATTAGTAATAAGACTAGTGCTCTGTTGCAGGGTGCGGGCGCACCTACTACTCGTCCTGTCAACATCGGTCAAGGATTAGAGACCTCTGGTCAAGTTCATAAACCTATTACGGCAGCAACGATCCTTCCAGCTGCCGAGCGACCGCAGGTTCCAGCTGCATCGTTGAAACAAGATAATCTCAAAAAGAAAACTCTCTCTCTTCTTGAAGAATATTTCAGCATCCGGATTTTGGATGAAGCCTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTTAAAGAAGCCATTTCATTAGCCCTAGAGAAAAGCCCGCCGTGTGTCGAAGCAGTTGTAAAATTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTGGTGACATTGGGACCGGATGTTTGCTATATGCTTGCATGCTCGACGATGCCGGCATTGATTTGCCTAAAGCCCCAATCAATTTTGGTGAGATAATTGGGAAGCTTGTTATGTCTGGTGGTTTGGATTTTCAGGTGGTGAAGGAGGTCCTTAAGAAGGTTGAAGACGACAGGTTCAGAAAAGATATATTTGATTCTGTCTTGAAGACGATTAGCTGTAATGTGTCTGGGCAAGGATTACTGGATTCATTGGCATCCGATATCGAGGCCTGTCGAAGTCTCGAATGCTAA | 2313 | 46.69 | MQQSDQTFLSLRPGGGRPTLLAPLTTLRPHAAASSLSLKGGDSRFESRERVRYAREQLLQIRQAVKVLDHILKLKRDIEVELFGEEQSWSRGESNQNSQSLNRYSEPDSRNWRGRSAQFSASGEERSRETIRDRDAGGHFDSRQDTNQLNRQDSNSSWTRTTSNQGGGPLALIKAEVPWSARRGSLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEVFEGADKLREELRQMTAPEQESKRRDKERLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKICPAEENVEAICQFFNTIGKQLDENTKSRHINDMYFGRLKELTTHPQLAPRLKFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGATVNIRNSRGVVSGSTGNTSPGGFPINRPGFGGMMPGMPGTRRMPGMPGMDNDNWEVPRARKGADGSGIQPSGRGQTPLVSKASTLNARPLPQGTGGLISNKTSALLQGAGAPTTRPVNIGQGLETSGQVHKPITAATILPAAERPQVPAASLKQDNLKKKTLSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTAGDIGTGCLLYACMLDDAGIDLPKAPINFGEIIGKLVMSGGLDFQVVKEVLKKVEDDRFRKDIFDSVLKTISCNVSGQGLLDSLASDIEACRSLEC | 770 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3867217 | 3872495 | + | Sed0009520.1 | Sed08g0571 | 722347 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0571 | 770 | SMART | ma3_7 | 605 | 717 | IPR003891 | - | |
Sed08g0571 | 770 | MobiDBLite | consensus disorder prediction | 454 | 478 | - | - | |
Sed08g0571 | 770 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 184 | 419 | - | - | |
Sed08g0571 | 770 | Pfam | MIF4G domain | 193 | 418 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed08g0571 | 770 | SUPERFAMILY | ARM repeat | 600 | 759 | IPR016024 | - | |
Sed08g0571 | 770 | MobiDBLite | consensus disorder prediction | 125 | 141 | - | - | |
Sed08g0571 | 770 | Pfam | MA3 domain | 605 | 717 | IPR003891 | - | |
Sed08g0571 | 770 | MobiDBLite | consensus disorder prediction | 506 | 526 | - | - | |
Sed08g0571 | 770 | Gene3D | - | 598 | 763 | - | - | |
Sed08g0571 | 770 | MobiDBLite | consensus disorder prediction | 142 | 168 | - | - | |
Sed08g0571 | 770 | Gene3D | - | 185 | 419 | - | - | |
Sed08g0571 | 770 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 85 | 768 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER) | |
Sed08g0571 | 770 | MobiDBLite | consensus disorder prediction | 454 | 470 | - | - | |
Sed08g0571 | 770 | ProSiteProfiles | MI domain profile. | 604 | 726 | IPR003891 | - | |
Sed08g0571 | 770 | MobiDBLite | consensus disorder prediction | 88 | 124 | - | - | |
Sed08g0571 | 770 | MobiDBLite | consensus disorder prediction | 86 | 170 | - | - | |
Sed08g0571 | 770 | SUPERFAMILY | ARM repeat | 187 | 421 | IPR016024 | - | |
Sed08g0571 | 770 | SMART | if4_15 | 193 | 418 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2118 | Sed-Chr4:35355020 | Sed08g0571 | Sed-Chr8:3867217 | 5.50E-48 | dispersed | |
Sed08g0571 | Sed-Chr8:3867217 | Sed09g0152 | Sed-Chr9:1177059 | 3.20E-58 | dispersed | |
Sed12g2281 | Sed-Chr12:33023449 | Sed08g0571 | Sed-Chr8:3867217 | 0.00E+00 | wgd | |
Sed13g1954 | Sed-Chr13:24441564 | Sed08g0571 | Sed-Chr8:3867217 | 4.30E-249 | wgd | |
Sed05g1753 | Sed-Chr5:31346957 | Sed08g0571 | Sed-Chr8:3867217 | 5.30E-252 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0571 | K03260 | - | csv:101207520 | 1241.1 |