Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0583 ATGCCCATCCCCTTCTCTTTCTCTACGCTAAAAGCGTTTGTTTCATCAAAATCTGTTCTCTTCTTTGTCGCTCAGACGCAGACTCTGATATTCGATTATGGAATCGGCTCTGTATCGGAAACTGTAAAACGAGTTTTGCAATACTCTGTGGCTTTGATTTTGTTGCTTGAATCGGCCATGGCGGAGCGAGAAGGCGTTGGAGCTGATGAACTTGGAGGCTTGGCTGGTTGTGCTGGGCGAGAGGATGAGGAAGAAGAAGAGATGGAGGATTCTGAGGATGAATCGGAGGAACGGGGAGTGAGCGAGTTGCAACCGGCTGATTTGATGGCGGCTTCGTCGGTTTGTGAAGCTGCTCGTTCTGAAACCCTAGCGCCGTCGAATCGGTCGTCGGAGAACGGTTTGCCTGTTAATTCTGCTGCGGAGTTACACGAAGGAGCTGAGTTGAAGCAAGCTCCATCCTCTCATAGTGAGCATTTGGCTGTTGAAGCTACCCAGACAGATAAGGTGCAAGAACAAAGCGAACTTCAGGTTGCAATATATAAAGGACCTGATTCAGATCAATCACCAACTTCAGTTACCCAGTCTATCTCATCTTCCGCAAGTCCTAGTTTATGCGAACATAAACTGTCACTGAAGAAGGTTCATAAAGACTGTAAGCCAGAACTGAGCCAGAATAATTCTTCCGTCCATAAAACTGCATTCTCTGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGGAAATATGGTCAGAAGCAAGTGAAGAGTCCGAAGGGTTCTCGTAGCTATTATAGGTGTACATATTCTGAATGCTGTGCTAAGAAGATTGAATGTTCTGATCACTCAGGCCTTGTAACAGAGGTTGTTTACAAGAGCCAACATAGCCATGACCCGCCTAGGAAAATAAACAACCCCAAGGAAAGTATGCTTGTGCCTTATGTGGAGCCTGTGGTTAAAAAAATAATTTCTGAACATTCTAGAAGAATAGTTAATGATTCAGATCCTCCTACGCCTTCAAAAGAACCTTTACGGGACACAGCTTTAGTCCATGTAAGAAAACGACAGTACTCGAATGACTCTGATGGTAATGATGAATCTAAAACCAAGGATGAGAATGACAACGAGTCTGAGACGAAACAAAAAGTTCAGAAAAGCAGCACGGGATATTCAGATTCTCCCTTAAAAGCTGGAAAAAAACCGAAATTTGTGGTGCATGCAGCGGGTGATGTTGGAATCTCAGGCGACGGATACAGATGGCGCAAGTATGGCCAGAAAATGGTCAAAGGAAATTCTCATCCTAGGAACTACTACCGATGTACCTCTGCTGGGTGTCCAGTCCGTAAGCATATCGAATCAGCTGCAGAAAATCCAAATGCAGTGATTATAACATACAAGGGAGTTCATGATCACGACAAACCTGTACCAAAGAAACGACAGGGTCCACCAAGTGCGCTTCTTGTAGCTGCTGCAGCTCCCGCCTCCATGAGCAATATGCAACCGAAGAAATCAGACGCGGTTCAGAGCCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCGTTGGACCTTGGAGGTGAGAAGGCAATCGAATCTGCTCGAACCCTTTTGAGCATTGGATTTGAAATCAAGCCTTGCTGA 1668 45.44 MPIPFSFSTLKAFVSSKSVLFFVAQTQTLIFDYGIGSVSETVKRVLQYSVALILLLESAMAEREGVGADELGGLAGCAGREDEEEEEMEDSEDESEERGVSELQPADLMAASSVCEAARSETLAPSNRSSENGLPVNSAAELHEGAELKQAPSSHSEHLAVEATQTDKVQEQSELQVAIYKGPDSDQSPTSVTQSISSSASPSLCEHKLSLKKVHKDCKPELSQNNSSVHKTAFSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYRCTYSECCAKKIECSDHSGLVTEVVYKSQHSHDPPRKINNPKESMLVPYVEPVVKKIISEHSRRIVNDSDPPTPSKEPLRDTALVHVRKRQYSNDSDGNDESKTKDENDNESETKQKVQKSSTGYSDSPLKAGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNSHPRNYYRCTSAGCPVRKHIESAAENPNAVIITYKGVHDHDKPVPKKRQGPPSALLVAAAAPASMSNMQPKKSDAVQSQISSTQWSVDAEGELTGEALDLGGEKAIESARTLLSIGFEIKPC 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3970225 3974712 - Sed0002449.1 Sed08g0583 722359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0583 555 ProSiteProfiles WRKY domain profile. 411 476 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0583 555 SMART WRKY_cls 416 475 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0583 555 SMART WRKY_cls 243 301 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0583 555 ProSiteProfiles WRKY domain profile. 244 302 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0583 555 MobiDBLite consensus disorder prediction 70 135 - -
Sed08g0583 555 MobiDBLite consensus disorder prediction 80 97 - -
Sed08g0583 555 SUPERFAMILY WRKY DNA-binding domain 241 302 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0583 555 FunFam WRKY transcription factor 402 477 - -
Sed08g0583 555 Gene3D WRKY domain 228 303 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0583 555 Gene3D WRKY domain 401 477 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0583 555 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 154 485 IPR044810 GO:0003700(InterPro)
Sed08g0583 555 MobiDBLite consensus disorder prediction 328 399 - -
Sed08g0583 555 MobiDBLite consensus disorder prediction 348 383 - -
Sed08g0583 555 Pfam WRKY DNA -binding domain 418 474 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0583 555 Pfam WRKY DNA -binding domain 245 300 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g0583 555 MobiDBLite consensus disorder prediction 119 135 - -
Sed08g0583 555 SUPERFAMILY WRKY DNA-binding domain 412 476 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0583 Sed-Chr8:3970225 Sed11g2032 Sed-Chr11:34377014 9.70E-41 dispersed
Sed08g0583 Sed-Chr8:3970225 Sed03g0237 Sed-Chr3:1472733 2.60E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39292 PF03106 WRKY 8.10E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0583 - - - 0.0