Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0592 ATGGCGGAAAAGGATCGAGACGGTTATTCTGGTGTGCTCCATGGAAAATATGAACTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTGTACCATGCTCGGAATCTGCAGACGAGGACGAACATGGCGATGAAAATCGTCGGAAAAGAGAAGGTGATTCAAGTCGGAATGATGGAGCAGATCAAGAGAGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATCGTCGAGCTTCACGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCGTTGGAGCTCGTTCGAGGCGGCGAACTGTTCTCCAAGATTTCTCGAGGCCGATTGCGAGAAGATCTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGCCACAGCCGTGGAGTTTACCATCGAGATCTGAAACCGGAGAATCTCCTTCTCGACGACGACGGAAACCTTAAGGTGACCGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGACGGATTGTTGCATACAACCTGTGGAACTCCGGCGTATGTAGCGCCGGAAGTCGTCGGAAAGAAGGGATACAACGGAGCCAAAGCTGATCTGTGGTCTTGTGGAGTCATCCTCTACGTTCTTCTTGCCGGATTTCTCCCATTTCAGGACGAAAATATTGTGTCGATGTACAGGAAGATTTACAGAGGAGATTTCAAGTGCCCGCCGTGGTTCTCGCCGGAAGCCCGTCGATTAGTCACCAAACTCCTCGATCCAAATCCAAGCACCAGAATCACAACGTCGAAGGTCATGGAATCCTCCTGGTTCCGTAAATCCATACCGAAAACTGTGATTACTAAAGCCGAGCAGGAATTCGAGGAGAGCAACGAGAAATTACAGCCGCCGGAGACATTGAATGCCTTCCACATAATCTCATTATCAGAAGGGTTTGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGAGAAAGAGGAGCTGAGATTCGCGACTACGAAGCCGGCGAGTAGCGTGATATCGAAGCTGGAAGAAGTGGCAAAGGCCGGGAAATTCAGCATAAAAAAGAGTGAATCCAGAGTCAGATTGCAGGGCCAGGAGTGTGGAAGAAAAGGGAAACTGGCGGTGGTGGCGGAGATCTTTGCCGTAACGCCGTCGTTGCTGGTGGTGGAGGTGAAGAAAGATAACGGCGACACCTTGGAATACAACCAGTTCTGCAGCAAAGAGCTCCGGCCGGCGTTGAAAGACATTGTCTGGACATCACCGGCGGAGAACTTGGCTTGA 1287 50.12 MAEKDRDGYSGVLHGKYELGRLLGHGTFAKVYHARNLQTRTNMAMKIVGKEKVIQVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFALELVRGGELFSKISRGRLREDLARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVVGKKGYNGAKADLWSCGVILYVLLAGFLPFQDENIVSMYRKIYRGDFKCPPWFSPEARRLVTKLLDPNPSTRITTSKVMESSWFRKSIPKTVITKAEQEFEESNEKLQPPETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTKPASSVISKLEEVAKAGKFSIKKSESRVRLQGQECGRKGKLAVVAEIFAVTPSLLVVEVKKDNGDTLEYNQFCSKELRPALKDIVWTSPAENLA 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4062597 4064647 + Sed0024736.1 Sed08g0592 722368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0592 428 CDD CIPK_C 301 416 - -
Sed08g0592 428 Gene3D Phosphorylase Kinase; domain 1 12 96 - -
Sed08g0592 428 Pfam NAF domain 297 357 IPR004041 GO:0007165(InterPro)
Sed08g0592 428 Gene3D Transferase(Phosphotransferase) domain 1 97 277 - -
Sed08g0592 428 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0592 428 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Sed08g0592 428 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0592 428 FunFam Non-specific serine/threonine protein kinase 11 304 - -
Sed08g0592 428 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165(InterPro)
Sed08g0592 428 CDD STKc_SnRK3 16 270 - -
Sed08g0592 428 Gene3D Kinase associated domain 1, KA1 295 421 - -
Sed08g0592 428 FunFam Non-specific serine/threonine protein kinase 295 420 - -
Sed08g0592 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed08g0592 428 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0592 428 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Sed08g0592 428 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Sed08g0592 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0592 Sed-Chr8:4062597 Sed08g1571 Sed-Chr8:30794847 3.80E-202 dispersed
Sed12g2295 Sed-Chr12:33140273 Sed08g0592 Sed-Chr8:4062597 3.80E-226 wgd
Sed05g1737 Sed-Chr5:31229042 Sed08g0592 Sed-Chr8:4062597 6.90E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79601 PF00069 Pkinase 9.00E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0592 - - - 0.0