Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0593 ATGAAACAGGATCGGCCATGTACAATTTCCCAAACCAGGGTGAAGAATGCAATTGCAGAAGGTTCTGATTCAAGCTGCATCACTTGCCCATTGCCTGCAAATGGATGCAGTACACAAGGAAGGAGTTCAACCTCTAAATTCAAAGGCATTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCCAATCACCAGCGTATTTGGCTCGGGACGTTCAAGTTGGAAAACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGCCATAGAAACTTTCCTTGGACTAAAGTCACAACTGAAGAGCCAAAGTTCCAGAAACTTTACACTACCGAAGCTTTACTTAGTATGTTAAAGGACGGTTCTTACCCAACCAAATTTGCTGAGTATTTGAGAGATCGTTCCGAAAGTGCACGAACACCAGCTGGTGTCTCTACAGCAAAGATGAATAACAACAAAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTCCCTCTTATATCAGCTAGCACAATAGAAAACGTGGAACTTGCCAATGACGATCATGACGTGCAACTAGTATTTTTCGACAAAATGATGAGACAATGGAAATTTCAATACTGTTACTGGAAAAGCAGCCAAAGCTACGTGTTTACGCGAGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCAAACGACGTTATAGCTTTCTACATGTGTGAAGCAGCAAATGCAGGTAATGCTAAAACAACATTCTGTTTGGTAGATGTTAAAAATCGTAACAATGATGGTAGCTGCTCGGTCGAGAATGAAATGACGAGTAGGGAAATGCAGCAAGATTTTGGGCATGTAGAAGTTGAAGAATTAGTGTTGCCTGAACGCATAGAGAATGAACTAAAAGATGATGCTGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1026 41.42 MKQDRPCTISQTRVKNAIAEGSDSSCITCPLPANGCSTQGRSSTSKFKGIVPQQNGHWGAQIYANHQRIWLGTFKLENEAAMAYDSAAIRIRSGDCHRNFPWTKVTTEEPKFQKLYTTEALLSMLKDGSYPTKFAEYLRDRSESARTPAGVSTAKMNNNKGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPLISASTIENVELANDDHDVQLVFFDKMMRQWKFQYCYWKSSQSYVFTRGWNRFVKEKQLKANDVIAFYMCEAANAGNAKTTFCLVDVKNRNNDGSCSVENEMTSREMQQDFGHVEVEELVLPERIENELKDDAEVKGFKLFGVHIK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4070707 4071732 - Sed0023752.1 Sed08g0593 722369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0593 341 CDD AP2 45 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0593 341 SUPERFAMILY DNA-binding pseudobarrel domain 167 266 IPR015300 -
Sed08g0593 341 Gene3D - 163 291 IPR015300 -
Sed08g0593 341 Gene3D AP2/ERF domain 45 102 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0593 341 SMART B3_2 168 283 IPR003340 GO:0003677(InterPro)
Sed08g0593 341 CDD B3_DNA 167 264 IPR003340 GO:0003677(InterPro)
Sed08g0593 341 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677(InterPro)
Sed08g0593 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 45 339 IPR044800 GO:0003700(InterPro)
Sed08g0593 341 ProSiteProfiles AP2/ERF domain profile. 46 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0593 341 FunFam AP2 domain-containing protein RAP2.8 45 102 - -
Sed08g0593 341 ProSiteProfiles B3 DNA-binding domain profile. 168 283 IPR003340 GO:0003677(InterPro)
Sed08g0593 341 Pfam B3 DNA binding domain 168 274 IPR003340 GO:0003677(InterPro)
Sed08g0593 341 SMART rav1_2 46 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1865 Sed-Chr6:43035548 Sed08g0593 Sed-Chr8:4070707 3.50E-46 dispersed
Sed08g0593 Sed-Chr8:4070707 Sed12g2297 Sed-Chr12:33147931 3.70E-160 dispersed
Sed12g2296 Sed-Chr12:33147931 Sed08g0593 Sed-Chr8:4070707 2.00E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39293 PF02362 B3 2.60E-24 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0593 K09287 - csv:101212246 544.658