Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0596 ATGCAACCCTGTACCAGAGAAATGCAATCCCTCAACTCTCTCTTAAACCACTCCTTTCAAGACCTCCACGCCGACGGTAACCACCACCACAACCTCAATCCGCCGCCGCCGCAGATCCCGGCGTCACAGCTCCACCATTTCGATCCGGCCGCCGGCGCAGCCACCCACGACGACTTCCTCGAGCAAATGCTCAACACGATCCCTTCCTGTTCCTGGCCGGACCTCAACCCTTCCAACACTAAATCCCCTTGGGACCTAAACCCCATCAATAAGCCGCCGTCCAGAGACATCTCCGATGAGATCGCCGCCACCTCCCCCGCCGCTAAGGCCGCCCTCATGCTCCAGCAACAGCTTTTCTTGTCCAGAAACATCCCCTCCGCCGCCGCCGCCGGTAACGGCCTCCCTCCTATGCCACTCTCCCAAAACGACGTCGTCGACAATTCCTGCTTCCGGCCACCAAACTCGGGTGGTTCGATTCAATCGCATAGTTTCGGAGCTCCGGCCGGTGGGTCCGCCGGAGTTTCTCCATCTCAGCCAAAGCAGAAAGTTAGAGCTCGCAGAGGCCAAGCCACTGATCCCCACAGTATCGCTGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCACTACAAGAACTCGTTCCCAATGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTATGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTAGGTGGAGCAGCTGCTGTCGCTCCTCTTGTTGCTGACGTGTCCTCTGAGGGGGGCGGTGAGTGCATGCAAGGAAGTGGTGCCCAAGGTGGCCGGAGTTCAACTAACGTCGGCGGAAACCAAACGGCGTCAACTAACGACAGCATGACGGTGACGGAGCAACAGGTGGCAAAGCTGATGGAAAAAGACATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGACTCTGTCTCATGCCGATCTCACTTGCCACGGCGATCTCCACGTCCACGTGTCACTCGAGGAATCCGATGATCAACGGCGGCGGCCCGCCGTCGCCGAGCATGTCGGTGCTGACTGTGCAGTCGACCAGCTTGGGGAACGGCTCCGTGTCGAAGCCGTGA 1131 57.12 MQPCTREMQSLNSLLNHSFQDLHADGNHHHNLNPPPPQIPASQLHHFDPAAGAATHDDFLEQMLNTIPSCSWPDLNPSNTKSPWDLNPINKPPSRDISDEIAATSPAAKAALMLQQQLFLSRNIPSAAAAGNGLPPMPLSQNDVVDNSCFRPPNSGGSIQSHSFGAPAGGSAGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGRSSTNVGGNQTASTNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPMINGGGPPSPSMSVLTVQSTSLGNGSVSKP 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4098574 4101986 - Sed0000198.1 Sed08g0596 722372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0596 376 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 335 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed08g0596 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983(InterPro)
Sed08g0596 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 249 IPR036638 GO:0046983(InterPro)
Sed08g0596 376 MobiDBLite consensus disorder prediction 145 193 - -
Sed08g0596 376 FunFam Transcription factor bHLH66 186 251 - -
Sed08g0596 376 MobiDBLite consensus disorder prediction 271 298 - -
Sed08g0596 376 Gene3D - 183 246 IPR036638 GO:0046983(InterPro)
Sed08g0596 376 MobiDBLite consensus disorder prediction 145 165 - -
Sed08g0596 376 SMART finulus 195 244 IPR011598 GO:0046983(InterPro)
Sed08g0596 376 MobiDBLite consensus disorder prediction 344 376 - -
Sed08g0596 376 MobiDBLite consensus disorder prediction 21 43 - -
Sed08g0596 376 MobiDBLite consensus disorder prediction 276 298 - -
Sed08g0596 376 Pfam Helix-loop-helix DNA-binding domain 194 239 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1264 Sed-Chr7:9507937 Sed08g0596 Sed-Chr8:4098574 4.10E-15 dispersed
Sed08g0596 Sed-Chr8:4098574 Sed09g1087 Sed-Chr9:34703580 2.00E-45 dispersed
Sed12g1588 Sed-Chr12:26028822 Sed08g0596 Sed-Chr8:4098574 2.30E-10 dispersed
Sed12g1589 Sed-Chr12:26029245 Sed08g0596 Sed-Chr8:4098574 2.80E-11 dispersed
Sed13g0445 Sed-Chr13:3024975 Sed08g0596 Sed-Chr8:4098574 1.60E-14 dispersed
Sed14g0851 Sed-Chr14:16832120 Sed08g0596 Sed-Chr8:4098574 9.80E-15 dispersed
Sed14g0852 Sed-Chr14:16832120 Sed08g0596 Sed-Chr8:4098574 9.90E-15 dispersed
Sed08g1273 Sed-Chr8:26496972 Sed08g0596 Sed-Chr8:4098574 9.10E-49 transposed
Sed08g1570 Sed-Chr8:30760877 Sed08g0596 Sed-Chr8:4098574 5.70E-77 transposed
Sed12g2300 Sed-Chr12:33179441 Sed08g0596 Sed-Chr8:4098574 2.70E-135 wgd
Sed03g2920 Sed-Chr3:46342887 Sed08g0596 Sed-Chr8:4098574 1.50E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39294 PF00010 HLH 1.40E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0596 - - - 0.0