Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0600 ATGACCGTGGAGGCTCATTTCGTTGCGTCCGCCGGCGATGATCGTTTTCCTGTTGGGATGCGGGTTCTTGCCGTCGACGATGACCCCATTTGTCTCAAACTGCTCCACAATCTTCTCGGTAGATGCCAATATCATGTTACAACGACTAATCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGGAACAATTTTGACTTGGTTATCAGTGATGTGAACATGCCAGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCAGTGATCATGTTATCAGCTCATAGTGATACTGAGCTTGTTATGAAGGGGATTGGGCATGGGGCGTGTGATTATCTGTTGAAGCCGGTTCGACTTGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTAGAAACAAAGGTGAAAAACAAGTTCCCTTGTCAAGATAAGGCTCGAAATGGAGGGAGTGAAGGTGAGCGGGGCTTCTCATCTATCAGTAATGCAGACAATGCGAAATTCAATAGAAAGCGCAAGGACCAGGATGAAGATGAGGACGAAGAAGGAAGGGAGAATGAGGTTGCTAATGACGATCCCTCTAACCAAAAGAAGCCTAGGGTAATGTGGTCGATTGAGTTACACCAGAAGTTCGTTTCGGCAGTTAATCAGATGGGTCTTGAAAACGCCGTGCCGAAGAGAATCTTGGATCTGATGAATGTTGAAGGTCTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAAAGTGGCATCCCAACAAGCTAGCTTGTACGCTACATTTGGGAGTAAAGATGGTGCATTCGTGCACATGGGTTCACTCGACGGATATGGAGGTTTACACGGCTTTGCAGGACCGGGACGAATTCCAAACTCTTCATTTTCCTCTTACTCACCTGTTGGCATGCTTGGAAGATTGAACTCCCCAGCTGGAATGGGTGTGCATGGAATCACTTCTTCTGGACTAATTCAGCAAAGCTCCAACCTTGGGAAGCTCCAGCTTCCTCCTAACCAAACTCCTAATCTGCTGCAAGGGATACCGATGTCGCTTGAGCTCAGCCAGTTGCACTGCAGCAAGTCCACCATCCCAATTGGAGACTTCAATATAATGAATGAGACATCTGGATTTGGAGTCCCCAACAATCTCCCTGATAGTAGAGTGAATATTGGAAATGCCACCATTTCAATTTCCACTGACCCATTCATGTTACAAGGAACTATGCCAACATATGGAAATCAGACTTCCCTTAGAGTGGATTCGCAAAATGGAGAAACTTTTGACAAAGAGATTGGTGGTTCAAATTTTATGGATCATGTTCCTAAAAATGGAAACTGGCAGAGAGCAGCACAATTGACTCCCAATGAAGCCTATCCCAACGATCAATTTACCGCAATAAACTCGGGCATTTCTTCTGCCCCAGTTGATTTTTTCTCTAGAAGTGAAGTTTCAGCTCTCTTGCAGGATTCAAGTAATATGCTATGTCAGGCAGGGGCTGTTGACAATGTTATTCAAGCTATGAGTACCATGCTGAAGCAGAGTTGGGAAGAGCATAAGCACGATTACGGTCTAAACGTGCAGCACAATCATGGTGCAATCAATTCTCTGGTTTCCAGCAATGGGAGTCTAAACCCCTTAACCCAGAGTTCCAATCAGAATAATTTAGCATATGATAGAATGGTCAGTTCATCTTTGGTAGTCCCATCAATTTCTGCTCCACAGTCCTTTGCTCAACATAGCGTGGTGGGAAATTGGGACCTAACGCAAAGGTGA 1824 44.68 MTVEAHFVASAGDDRFPVGMRVLAVDDDPICLKLLHNLLGRCQYHVTTTNQSIEALKMLRENRNNFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIGHGACDYLLKPVRLEELKNIWQHVIRRKKLETKVKNKFPCQDKARNGGSEGERGFSSISNADNAKFNRKRKDQDEDEDEEGRENEVANDDPSNQKKPRVMWSIELHQKFVSAVNQMGLENAVPKRILDLMNVEGLTRENVASHLQKYRLYLKRISKVASQQASLYATFGSKDGAFVHMGSLDGYGGLHGFAGPGRIPNSSFSSYSPVGMLGRLNSPAGMGVHGITSSGLIQQSSNLGKLQLPPNQTPNLLQGIPMSLELSQLHCSKSTIPIGDFNIMNETSGFGVPNNLPDSRVNIGNATISISTDPFMLQGTMPTYGNQTSLRVDSQNGETFDKEIGGSNFMDHVPKNGNWQRAAQLTPNEAYPNDQFTAINSGISSAPVDFFSRSEVSALLQDSSNMLCQAGAVDNVIQAMSTMLKQSWEEHKHDYGLNVQHNHGAINSLVSSNGSLNPLTQSSNQNNLAYDRMVSSSLVVPSISAPQSFAQHSVVGNWDLTQR 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4143160 4146363 - Sed0014906.1 Sed08g0600 722376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0600 607 FunFam Two-component response regulator 203 266 - -
Sed08g0600 607 SUPERFAMILY CheY-like 19 144 IPR011006 -
Sed08g0600 607 CDD REC_typeB_ARR-like 22 136 - -
Sed08g0600 607 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160(InterPro)
Sed08g0600 607 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160(InterPro)
Sed08g0600 607 SMART REC_2 20 132 IPR001789 GO:0000160(InterPro)
Sed08g0600 607 MobiDBLite consensus disorder prediction 150 206 - -
Sed08g0600 607 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Sed08g0600 607 Gene3D - 203 266 - -
Sed08g0600 607 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 263 IPR017930 -
Sed08g0600 607 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 343 IPR045279 GO:0009736(InterPro)
Sed08g0600 607 Gene3D - 19 153 - -
Sed08g0600 607 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677(InterPro)
Sed08g0600 607 PIRSF RR_ARR_type-B 1 602 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed08g0600 607 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0600 Sed-Chr8:4143160 Sed12g2305 Sed-Chr12:33214939 1.50E-260 dispersed
Sed11g0167 Sed-Chr11:1498704 Sed08g0600 Sed-Chr8:4143160 7.10E-134 wgd
Sed12g2304 Sed-Chr12:33214239 Sed08g0600 Sed-Chr8:4143160 5.70E-256 wgd
Sed13g1979 Sed-Chr13:24680189 Sed08g0600 Sed-Chr8:4143160 3.90E-116 wgd
Sed05g1730 Sed-Chr5:31101267 Sed08g0600 Sed-Chr8:4143160 2.80E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39295 PF00072 Response_reg 7.50E-25 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0600 K14491 - csv:101213687 865.529