Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0606 ATGGGGGATATATCATTGGAAGATGTTAAGAATGAGAATGTTGATCTTGAACGAATTCCTGTAGAGGAAGTTTTTGAGCAACTAAAATGTACAAAAGAAGGATTGAGTACAGAGGAGGGAGAAAAAAGACTGCAAATTTTTGGGCCTAACAAGCTTGAAGAGAAGAAAGAGAGCAAGGTTTTGAAGTTCTTGGGATTTATGTGGAATCCTCTTTCTTGGGTTATGGAAGCTGCAGCAATCATGGCTATTGTTCTTGCAAATGGAGGGGGGAAACCACCGGATTGGCAAGATTTTGTTGGTATTACGGTTTTGTTGATCATCAATTCTACTATTAGTTTTATTGAAGAAAACAATGCTGGGAATGCAGCAGCTGCTTTGATGGCTGGTCTTGCCCCCAAAACCAAGGTTTTAAGAGATGGAAAATGGAAAGAAGAGGAGGCAGCAATTCTGGTTCCAGGAGATGTGATTAGTGTCAAATTGGGAGATATTATCCCGGCCGATGCACGTCTCTTGGAAGGCGATCCTTTAAAGATTGATCAGTCTGCTCTTACGGGTGAATCTTTGCCTGCCACCAAGTATCCTGGGGATGAAGTGTTCTCTGGCTCAACTTGCAAGCAAGGTGAGATCGAGGCCGTTGTAATCGCCACTGGTGTACATACATTCTTCGGAAAGGCAGCTCATCTTGTGGAAAACACAAACCAAGTTGGTCATTTTCAAAAGGTGTTGACATCGATCGGTAACTTCTGCATATGCTCGATCGCGGTGGGGATGTTCATTGAGATTTTAGTAATGTATCCAATCCAGAACAGACCATACAGAGAAGGAATTGATAACTTGTTGGTGCTTCTCATTGGAGGTATTCCCATTGCTATGCCAACCGTTCTGTCGGTAACCATGGCCATCGGATCACATCGCCTTTCGCAACAAGGTGCCATTACCAAGAGAATGACAGCAATTGAAGAGATGGCTGGGATGGATGTCCTGTGCAGTGACAAGACTGGAACCCTCACTCTGAACAAGCTCACAGTGGACAAATCCCTGATTGAGGTGTTTGCACCAAGCATTGACAAGGATGCTGTTATGTTGTATGCTGCAAGAGCTTCAAGAGTTGAAAATCAAGATGCAATTGATGCCTGCATTGTTGGAATGTTGGCTGACCCCAAAGAGGCAAGGGCAGGAATAACTGAAGTACATTTCTTGCCTTTCAATCCAGTCGAAAAGCGTACCGCCATTACCTATATTGACCAAGAGGGTAACTGGCACAGAAGCAGCAAAGGTGCTCCTGAACAGATAATTGAGCTTTGTGGTCTTAAAGGAGAATTGGGAAAGAAAGCTCATGCCATTATTGATAACTATGCTAATCGCGGTCTACGTTCCTTGGCAGTTGGTCGACAGACTGTTAAAGATAAGAACAAAGAGAGTGCTGGAGAACCATGGGAATTTGTTGGTCTCTTGCCCTTATTTGATCCTCCAAGACATGATAGTGCGGAAACCATCCAGCGCGCTCTCGAACTTGGTGTTAATGTTAAGATGATCACTGGTGATCAACTTGCAATAGGAAAAGAAACTGGTCGGAGGCTCGGCATGGGCACCAACATGTATCCATCGTCGTCATTGCTCGGCCAAAGCAAAGATGAGTCAATTGCTTCCATTCCTATTGATGAACTCATTGAGAAGGCTGATGGATTTGCCGGTGTCTTCCCTGAACACAAATATGAAATTGTTAAGAAACTTCAGGAGAGGAACCATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCTGCTCTCAAGAGGGCCGACATCGGTATTGCCGTGGCTGATGCAACCGATGCAGCAAGAAGTGCATCAGACATTGTCTTAACAGAGCCAGGGCTAAGTGTGATTATAAGTGCTGTTTTAACTAGCAGGGCCATCTTTCAAAGAATGAAAAACTACACCATCTATGCAGTTTCCATCACAATCCGTATCGTGTTGGGATTCATGCTTGTTGCTCTCATTTGGAAGTTCGATTTCTCGCCTTTTATGGTTTTGGTCATTGCCATCCTAAACGATGGAACCATCATGACCATTTCAAAGGATAAAGTCAAGCCATCACCTATGCCAGATTCATGGAAACTCAATGAAATCTTTGCCACTGGTGTTGTCCTTGGAACATACATGGCCTTCATGACAGTCGTTTTCTTCTGGCTCGCCCATGAAACTAACTTCTTCCCGGACACATTTGGTGTAAAGCCACTCCAAGGTATTGCTGAGATGAACTCTGCTCTCTATCTTCAAGTGAGCATCATCAGTCAAGCTCTCATCTTTGTCACAAGGTCAAGAAGTTGGTCGTTTATCGAATGCCCCGGTATCTTGCTAGTTATAGCCTTCATTGCAGCACAAATGGTTGCCACTCTGATTGCTGTATATTGTGAATGGGACTTTGCAAGGACTAAAGGCATTGGATGGGAATGGGCAGGAGCCATCTGGGTTTTCAGCATTGTCACTTACTTCCCTCTCGACGTTCTCAAATTCACAATCCGATACGCGCTCAGCGGCAAGGCTTGGGACAACATGCTCGATAATAAGACGGCGTTTACGACGAAGAAGGATTACGGAAAAGGTGAAAGAGAGGCACAATGGGCAGTAGCTCAACGCACGATGCACGGGCTGCAGCCACCGGAAACCAAATTTCACGAGAAGAGCAGCCATGAGGATCTTTCAGAGATTGCAGAGCAAGCCAAGAAAAGAGCTGAAGTTGCAAGGCTCAGGGAACTGCACACTTTAAAGGGCCATGTGGAGTCAGTAGTGAAGTTGAAAGGGTTAGATATTGACACTATCCAACAACATTATACTGTTTAA 2847 44.61 MGDISLEDVKNENVDLERIPVEEVFEQLKCTKEGLSTEEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIVLANGGGKPPDWQDFVGITVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPATKYPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTNQVGHFQKVLTSIGNFCICSIAVGMFIEILVMYPIQNRPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFAPSIDKDAVMLYAARASRVENQDAIDACIVGMLADPKEARAGITEVHFLPFNPVEKRTAITYIDQEGNWHRSSKGAPEQIIELCGLKGELGKKAHAIIDNYANRGLRSLAVGRQTVKDKNKESAGEPWEFVGLLPLFDPPRHDSAETIQRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPIDELIEKADGFAGVFPEHKYEIVKKLQERNHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLVIAILNDGTIMTISKDKVKPSPMPDSWKLNEIFATGVVLGTYMAFMTVVFFWLAHETNFFPDTFGVKPLQGIAEMNSALYLQVSIISQALIFVTRSRSWSFIECPGILLVIAFIAAQMVATLIAVYCEWDFARTKGIGWEWAGAIWVFSIVTYFPLDVLKFTIRYALSGKAWDNMLDNKTAFTTKKDYGKGEREAQWAVAQRTMHGLQPPETKFHEKSSHEDLSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 948
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 4183040 4187633 + Sed0009003.1 Sed08g0606 722382
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0606 948 NCBIfam HAD-IC family P-type ATPase 101 357 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g0606 948 NCBIfam HAD-IC family P-type ATPase 563 675 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g0606 948 SFLD p-type atpase 311 639 IPR044492 -
Sed08g0606 948 Coils Coil 899 919 - -
Sed08g0606 948 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Sed08g0606 948 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Sed08g0606 948 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Sed08g0606 948 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Sed08g0606 948 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Sed08g0606 948 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Sed08g0606 948 PANTHER CALCIUM-TRANSPORTING ATPASE 17 877 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Sed08g0606 948 Gene3D - 897 948 - -
Sed08g0606 948 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Sed08g0606 948 Pfam E1-E2 ATPase 131 308 - -
Sed08g0606 948 CDD P-type_ATPase_H 34 840 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Sed08g0606 948 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g0606 948 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g0606 948 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g0606 948 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g0606 948 PRINTS H+-transporting ATPase (proton pump) signature 759 780 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed08g0606 948 SFLD C1.7: P-type atpase like 311 639 - -
Sed08g0606 948 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 805 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Sed08g0606 948 FunFam Plasma membrane ATPase 481 636 - -
Sed08g0606 948 FunFam Plasma membrane ATPase 132 216 - -
Sed08g0606 948 Gene3D - 132 216 - -
Sed08g0606 948 Gene3D - 94 814 - -
Sed08g0606 948 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Sed08g0606 948 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 846 IPR023298 -
Sed08g0606 948 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Sed08g0606 948 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Sed08g0606 948 FunFam ATPase 4 plasma membrane-type 574 814 - -
Sed08g0606 948 Gene3D - 326 625 IPR023214 -
Sed08g0606 948 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Sed08g0606 948 SUPERFAMILY HAD-like 325 635 IPR036412 -
Sed08g0606 948 Gene3D - 341 488 IPR023299 GO:0000166(InterPro)
Sed08g0606 948 FunFam Plasma membrane ATPase 341 488 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0606 Sed-Chr8:4183040 Sed11g0557 Sed-Chr11:5847127 0.00E+00 dispersed
Sed12g2309 Sed-Chr12:33241248 Sed08g0606 Sed-Chr8:4183040 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0606 K01535 - csv:101214655 1729.53