Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0677 ATGTCAAGCAGCTGCATAGATATTGCACCTGAGCAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAATAGCTTGTTTGATATTGTGACAGTCAGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCTTGGCAAGATGTTCAGGTTCCAAATTACCATCTGTACACTTCTAGTGGACCTGATTTTCAGGCTGATTTTGGATCCTCATCCAAATGTAACAATAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGCAAAGGGCTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATACAAAGGATTAAGGCAAATAATCCCGAGATTAGCCATAGAGTAGCTTTCAGCACAGCAGCTAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGTCAAGGGCCGCTCTATTAAACAAATGA 576 42.53 MSSSCIDIAPEQLCYIPCNFCNIVLAVSVPCNSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYHLYTSSGPDFQADFGSSSKCNNNKMEIRAPTTIAAEQRAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHRVAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMSRAALLNK 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4823206 4827402 + Sed0016201.1 Sed08g0677 722453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0677 191 FunFam axial regulator YABBY 5-like 103 161 - -
Sed08g0677 191 CDD HMG-box_SF 119 155 - -
Sed08g0677 191 SUPERFAMILY HMG-box 107 158 IPR036910 -
Sed08g0677 191 Gene3D High mobility group box domain 103 160 IPR036910 -
Sed08g0677 191 Pfam YABBY protein 9 165 IPR006780 GO:0007275(InterPro)
Sed08g0677 191 PANTHER PROTEIN YABBY 6-RELATED 10 174 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0677 Sed-Chr8:4823206 Sed11g0124 Sed-Chr11:1057656 2.00E-70 dispersed
Sed08g0677 Sed-Chr8:4823206 Sed08g0678 Sed-Chr8:4823206 3.60E-96 tandem
Sed11g0122 Sed-Chr11:1057656 Sed08g0677 Sed-Chr8:4823206 3.40E-70 wgd
Sed12g2369 Sed-Chr12:33608023 Sed08g0677 Sed-Chr8:4823206 2.40E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39298 PF04690 YABBY 3.50E-68 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0677 K25796 - csv:101215951 355.525