Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0678 ATGTCAAGCAGCTGCATAGATATTGCACCTGAGCAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAATAGCTTGTTTGATATTGTGACAGTCAGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCTTGGCAAGATGTTCAGGCTGATTTTGGATCCTCATCCAAATGTAACAATAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGCAAAGGGCTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATACAAAGGATTAAGGCAAATAATCCCGAGATTAGCCATAGAGTAGCTTTCAGCACAGCAGCTAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGTCAAGGGCCGCTCTATTAAACAAATGA 531 42.75 MSSSCIDIAPEQLCYIPCNFCNIVLAVSVPCNSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQADFGSSSKCNNNKMEIRAPTTIAAEQRAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHRVAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMSRAALLNK 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4823206 4827402 + Sed0016201.2 Sed08g0678 722454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0678 176 CDD HMG-box_SF 104 140 - -
Sed08g0678 176 Gene3D High mobility group box domain 88 145 IPR036910 -
Sed08g0678 176 SUPERFAMILY HMG-box 92 143 IPR036910 -
Sed08g0678 176 PANTHER PROTEIN YABBY 6-RELATED 10 159 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Sed08g0678 176 Pfam YABBY protein 9 150 IPR006780 GO:0007275(InterPro)
Sed08g0678 176 FunFam axial regulator YABBY 5-like 88 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0678 Sed-Chr8:4823206 Sed12g2369 Sed-Chr12:33608023 2.10E-90 dispersed
Sed08g0677 Sed-Chr8:4823206 Sed08g0678 Sed-Chr8:4823206 3.60E-96 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39299 PF04690 YABBY 1.20E-60 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0678 K25796 - csv:101215951 325.865