Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0682 ATGAAGCGACTGTCTAGAAAAGTTGGGAAGTATGAGGTAGGGCGGACGGTTGGCGAAGGAACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGAGAGGTTGTGGCCATGAAAGTTTTGGCCAAAAGTAGCATTCTCAGGCATAAAATGGTTGAGCAGATTAATAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCAGACTGCACGAGGCGTTGGCTAGCCGGACAAAGATATACATTATTCTTGAGTTTGTCTCCGGAGGTGAACTGTATGATAAAATACATCTTCAAAAGAAGCTTCCCGAAATTGAGTCTAGACAATACTTTCAACAACTAATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTGTACCACAGGGACCTCAAGCCTGAAAACCTTCTTCTCGATGCTGATGGAAATCTAAAGGTTTCAGACTTTGGACTGAGTGCACTGTCTCGACAAGGTGTCGAGCTGCTTCACACCACATGTGGAACTCCTAATTACGTTGCACCGGAGGTTCTTGGAGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGGGTTATCCTGTATGTCCTAATGGCTGGGTATCTTCCATTTTCAGAGATAGACCTCCCCACTTTAAACAAGAAGATAAATGCGGCAGAGTATTCCTGTCCTTATTGGTTTTCCTCTGGTGCGAAGTCCTTGATACAAAAGATCCTTGATCCAAATCCTAAAACTCGGATTCAAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACAAACCTGCTAAACTAGGAGAAGATGAAGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGGAAGAATATGTTTGTGATCAATCAGAAAAAGTTGGCGATGGTCCGTTAATAATGAATGCTGATCAGTCAGAAAAAGTTGGCGATGGTCCGTTAATAATGAATGCATTTGAGATGATAACTTTATCTCAAGGATTAAATCTTTCACCATTATTTGACCGGCGGCAGGACTTTATAAAGCGGCAAACACGTTTCGTTTCTCGTAAACCTGCTAACCTCATAATGTCTACCATTGAAGTTGTAGCAAAAGCAATGGGTTTGAATGTACACACTCGTAATTTCAAGACAAGGTTGGAAAGAAGAACTGGACACAGGGTTGCAGAGTTAGCAGCTGTGCTGGAGATTTATGAAGTGGCGCCATCACTTTTTATGGTGGACGTTCGCAAAGCTGCTGGAGATACGCTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAACATCATCTGGAAACCAACTGAGAGTGTGGGGAACTGA 1359 42.16 MKRLSRKVGKYEVGRTVGEGTFAKVKFACNTETGEVVAMKVLAKSSILRHKMVEQINREISIMKIVRHPHIVRLHEALASRTKIYIILEFVSGGELYDKIHLQKKLPEIESRQYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSRQGVELLHTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSEIDLPTLNKKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIQIEEIRKDPWFRRNYKPAKLGEDEEVNLDDVRAVFDDIEEEYVCDQSEKVGDGPLIMNADQSEKVGDGPLIMNAFEMITLSQGLNLSPLFDRRQDFIKRQTRFVSRKPANLIMSTIEVVAKAMGLNVHTRNFKTRLERRTGHRVAELAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPTESVGN 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4883467 4889298 + Sed0025705.1 Sed08g0682 722458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0682 452 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Sed08g0682 452 SMART serkin_6 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0682 452 Pfam NAF domain 322 381 IPR004041 GO:0007165(InterPro)
Sed08g0682 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0682 452 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Sed08g0682 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 430 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed08g0682 452 ProSiteProfiles NAF domain profile. 320 344 IPR018451 GO:0007165(InterPro)
Sed08g0682 452 CDD CIPK_C 326 441 - -
Sed08g0682 452 Gene3D Transferase(Phosphotransferase) domain 1 2 313 - -
Sed08g0682 452 SUPERFAMILY Protein kinase-like (PK-like) 8 274 IPR011009 -
Sed08g0682 452 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0682 452 FunFam Non-specific serine/threonine protein kinase 4 305 - -
Sed08g0682 452 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0682 452 Gene3D Kinase associated domain 1, KA1 320 445 - -
Sed08g0682 452 FunFam Non-specific serine/threonine protein kinase 319 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1436 Sed-Chr3:9128983 Sed08g0682 Sed-Chr8:4883467 6.60E-165 dispersed
Sed08g0682 Sed-Chr8:4883467 Sed08g2652 Sed-Chr8:38683291 1.00E-141 dispersed
Sed08g0682 Sed-Chr8:4883467 Sed08g0683 Sed-Chr8:4883467 1.30E-253 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79604 PF00069 Pkinase 2.70E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0682 - - - 0.0