Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0682 | ATGAAGCGACTGTCTAGAAAAGTTGGGAAGTATGAGGTAGGGCGGACGGTTGGCGAAGGAACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGAGAGGTTGTGGCCATGAAAGTTTTGGCCAAAAGTAGCATTCTCAGGCATAAAATGGTTGAGCAGATTAATAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCAGACTGCACGAGGCGTTGGCTAGCCGGACAAAGATATACATTATTCTTGAGTTTGTCTCCGGAGGTGAACTGTATGATAAAATACATCTTCAAAAGAAGCTTCCCGAAATTGAGTCTAGACAATACTTTCAACAACTAATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTGTACCACAGGGACCTCAAGCCTGAAAACCTTCTTCTCGATGCTGATGGAAATCTAAAGGTTTCAGACTTTGGACTGAGTGCACTGTCTCGACAAGGTGTCGAGCTGCTTCACACCACATGTGGAACTCCTAATTACGTTGCACCGGAGGTTCTTGGAGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGGGTTATCCTGTATGTCCTAATGGCTGGGTATCTTCCATTTTCAGAGATAGACCTCCCCACTTTAAACAAGAAGATAAATGCGGCAGAGTATTCCTGTCCTTATTGGTTTTCCTCTGGTGCGAAGTCCTTGATACAAAAGATCCTTGATCCAAATCCTAAAACTCGGATTCAAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACAAACCTGCTAAACTAGGAGAAGATGAAGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGGAAGAATATGTTTGTGATCAATCAGAAAAAGTTGGCGATGGTCCGTTAATAATGAATGCTGATCAGTCAGAAAAAGTTGGCGATGGTCCGTTAATAATGAATGCATTTGAGATGATAACTTTATCTCAAGGATTAAATCTTTCACCATTATTTGACCGGCGGCAGGACTTTATAAAGCGGCAAACACGTTTCGTTTCTCGTAAACCTGCTAACCTCATAATGTCTACCATTGAAGTTGTAGCAAAAGCAATGGGTTTGAATGTACACACTCGTAATTTCAAGACAAGGTTGGAAAGAAGAACTGGACACAGGGTTGCAGAGTTAGCAGCTGTGCTGGAGATTTATGAAGTGGCGCCATCACTTTTTATGGTGGACGTTCGCAAAGCTGCTGGAGATACGCTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAACATCATCTGGAAACCAACTGAGAGTGTGGGGAACTGA | 1359 | 42.16 | MKRLSRKVGKYEVGRTVGEGTFAKVKFACNTETGEVVAMKVLAKSSILRHKMVEQINREISIMKIVRHPHIVRLHEALASRTKIYIILEFVSGGELYDKIHLQKKLPEIESRQYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSRQGVELLHTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSEIDLPTLNKKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIQIEEIRKDPWFRRNYKPAKLGEDEEVNLDDVRAVFDDIEEEYVCDQSEKVGDGPLIMNADQSEKVGDGPLIMNAFEMITLSQGLNLSPLFDRRQDFIKRQTRFVSRKPANLIMSTIEVVAKAMGLNVHTRNFKTRLERRTGHRVAELAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPTESVGN | 452 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4883467 | 4889298 | + | Sed0025705.1 | Sed08g0682 | 722458 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0682 | 452 | ProSitePatterns | Protein kinases ATP-binding region signature. | 17 | 40 | IPR017441 | GO:0005524(InterPro) | |
Sed08g0682 | 452 | SMART | serkin_6 | 11 | 264 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0682 | 452 | Pfam | NAF domain | 322 | 381 | IPR004041 | GO:0007165(InterPro) | |
Sed08g0682 | 452 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g0682 | 452 | FunFam | Non-specific serine/threonine protein kinase | 2 | 90 | - | - | |
Sed08g0682 | 452 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 6 | 430 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Sed08g0682 | 452 | ProSiteProfiles | NAF domain profile. | 320 | 344 | IPR018451 | GO:0007165(InterPro) | |
Sed08g0682 | 452 | CDD | CIPK_C | 326 | 441 | - | - | |
Sed08g0682 | 452 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 313 | - | - | |
Sed08g0682 | 452 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 274 | IPR011009 | - | |
Sed08g0682 | 452 | ProSiteProfiles | Protein kinase domain profile. | 11 | 264 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0682 | 452 | FunFam | Non-specific serine/threonine protein kinase | 4 | 305 | - | - | |
Sed08g0682 | 452 | Pfam | Protein kinase domain | 11 | 264 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0682 | 452 | Gene3D | Kinase associated domain 1, KA1 | 320 | 445 | - | - | |
Sed08g0682 | 452 | FunFam | Non-specific serine/threonine protein kinase | 319 | 445 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1436 | Sed-Chr3:9128983 | Sed08g0682 | Sed-Chr8:4883467 | 6.60E-165 | dispersed | |
Sed08g0682 | Sed-Chr8:4883467 | Sed08g2652 | Sed-Chr8:38683291 | 1.00E-141 | dispersed | |
Sed08g0682 | Sed-Chr8:4883467 | Sed08g0683 | Sed-Chr8:4883467 | 1.30E-253 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79604 | PF00069 | Pkinase | 2.70E-72 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0682 | - | - | - | 0.0 |