Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0702 ATGGATGGAATCAGAAACAGAGCAGGTTTTAGGGTTTCTGTTTGTGGGCAAGAAGAGCTCGAACAAATCTCTCGAGATGGCAGCCAGTACAGCCTCACCACCGGGATTTTGCCCTCTCTTGGCGCGAGAAGTAACCGGAGAGTTAAGCTCCGGTGGTTCATCATTTCGCCTTATGACCGGCGTTACAGGATTTGGGAGACTTTTCTAGTTGGATTGGTGGTTTATACTGCCTGGGTCTCGCCGTTCGAGTTCGGGTTCCTTAAGAAACCTCAATCGCCGCTTTCAGTTACAGACAATGTGGTTAATGGATTTTTCTTTGTGGATATTGTTCTCACATTCTTTGTTGCTTATCTTGATAAAGCTACATATTTACTTGTTGATGAACCGAAAAAAATTGCTCTAAAGTATGCAACTACATGGCTCATCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAAAAGATTTCCCCTCCGCCTCTCCGTTCGTATGGATTATTCAATATGCTTCGTCTTTGGCGACTCAGAAGAGTCAGTGCTCTGTTTTCCAGATTGGAAAAAGATAGAAACTATAACTACTTTTGGGTTCGATGTGCGAAACTCGTTTGTGTTACTCTCTTTGCGGTTCACTGTGCCGCATGCTTCTATTACCTTATTGCTGCTAGTTATCATGACCCGAAAAGAACCTGGATTGGAGCATCTATGGAAAACTTTCTTGAGGAAAGTTTAGGGATTAGATATGTCACTTCCATTTATTGGTCCATCACCACACTAACCACAGTCGGTTATGGTGACTTGCATCCGGTGAATACGAGGGAGATGGTTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAATATGACCAATTTGGTTGTTCATGGGACAAGTAGAACTAGAAAATTTAGAGATACCATACAAGCAGCTTCAAGTTTCTCCCATAGGAATCAACTTCCTCCTCGTTTGCAAGACCAAATGCTTGCACATTTATGTCTAAAGTTCAGAACTGACTCTGAAGGATTACAGCAGCAAGAAACTCTTGATTCCTTGCCTAAAGCCATCCGATCGAGCATTTCGCACTATCTTTTCTATTCTCTAATAGACAAGGTCTACTTGTTTCGCGGTGTTTCAAATGACTTATTATTTCAACTGGTTTCAGAAATGAAGGCAGAATATTTTCCTCCAAAAGAAGATGTGATTTTACAAAATGAAGCCCCAACAGACTTCTACATTCTTGTCACGGGTGCTGTGGATTTGATGGTTCTCAGGAATGGAGTTGTTGGAGAGGCTAAAACCGGTGAAATTTGCGGTGAGGTTGGGGTGTTATGTTACAGGCCACAACTATTTACTGTGCGCACGAAGCGATTGAGTCAGTTGTTGCGTCTTAATCGCACTTCTTTCCTGAATATCGTACAATCGAATGTCGGTGATGGGACTATAATCATGAACAATCTTCTTCAGCATTTAAGGGACCTCAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGAAGAATGGACCTACCACTCAGTCTTTGTTTTGCAACACTTAGAGGAGATGACTTGCTTTTACACCAACTTTTGAAGCGAGGTCTCGATCCAAATGAATCCGACAACAGTGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAACGAGAACTGTGTGCTTCTATTACTAGACTATGGAGCAGATCCCAATAGTAAAGATACTGATGGGAGTGTGCCATTGTGGGAGGCCATACTAGGTGGCCATGAGCCGGTAGCTCAGCTACTTATCGACAATGGCGCTAATCTTCAATCGGGGGAGATGGGTCACTTTGCGTGTACTGCTGCGGAGCAAAACAACCTTCCGTTGCTCAAGGACATTCTCCAATATGGAGGAGAAGTTACGAATGCGAAGAGCAATGGAACGACAGCTTTACATGTTGCTGTCTGTGAAGACAACGTTGAGATTGTAAAGTTCCTTCTTGCACAAGGAGCTGATATTGACAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCGGACCAGCAGGGACATGAAGAAATAAAAAACCTCTTCCAGACAATGAAAGAGTCAAAAACTCAATCCGTCGTTGCCATTCCCGAGAAGCAGAGTGGGATTCGCTTCCTCGGAAGATTTACGAGCGAGCCAATGATTCGCCCTGTATCTCAAGAAGGAAGTGATGGTTCATGGCCGGGTCAATCTCGACCGCGGCGTAAGACTAACAACTTTAATAACTCATTGTTTGGTATCATGTCAGCAGCACACTCAGCCGAGAAAGACATTCTTTTACCCGGTAACCAAACCAGAGGAGAGAACTCTGGAACCAATCCTGCAAGGGTGATAATCAGCTGTCCAGAGATTGGTGAAGTTTCGGGGAAGTTGGTGCTGCTTCCAGGAAGCTTTAACGAGCTGCTCGAGATTGGTGCCAAGAAATATGGGATTCTGCCTTCAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTCATTATGGACGGTGATCATCTTATTTTTGTTAGCAATGAAAGAACCATATAA 2613 43.47 MDGIRNRAGFRVSVCGQEELEQISRDGSQYSLTTGILPSLGARSNRRVKLRWFIISPYDRRYRIWETFLVGLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFFVDIVLTFFVAYLDKATYLLVDEPKKIALKYATTWLIFDVISTIPSELAQKISPPPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLIAASYHDPKRTWIGASMENFLEESLGIRYVTSIYWSITTLTTVGYGDLHPVNTREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFSHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLIDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLMVLRNGVVGEAKTGEICGEVGVLCYRPQLFTVRTKRLSQLLRLNRTSFLNIVQSNVGDGTIIMNNLLQHLRDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNSGRTSLHIAASKGNENCVLLLLDYGADPNSKDTDGSVPLWEAILGGHEPVAQLLIDNGANLQSGEMGHFACTAAEQNNLPLLKDILQYGGEVTNAKSNGTTALHVAVCEDNVEIVKFLLAQGADIDKPDVHGWTPRDLADQQGHEEIKNLFQTMKESKTQSVVAIPEKQSGIRFLGRFTSEPMIRPVSQEGSDGSWPGQSRPRRKTNNFNNSLFGIMSAAHSAEKDILLPGNQTRGENSGTNPARVIISCPEIGEVSGKLVLLPGSFNELLEIGAKKYGILPSKVLNKDGAAIEDIEVIMDGDHLIFVSNERTI 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5101328 5106731 - Sed0008366.1 Sed08g0702 722478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0702 870 SMART ANK_2a 557 586 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 SMART ANK_2a 524 553 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 SMART ANK_2a 590 619 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 SMART ANK_2a 654 683 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 Pfam Ankyrin repeats (3 copies) 529 618 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 Pfam Ankyrin repeats (3 copies) 628 704 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 MobiDBLite consensus disorder prediction 748 763 - -
Sed08g0702 870 Pfam Ion transport protein 62 307 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g0702 870 Gene3D - 525 709 IPR036770 -
Sed08g0702 870 SMART cnmp_10 380 494 IPR000595 -
Sed08g0702 870 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0702 870 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0702 870 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0702 870 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0702 870 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0702 870 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed08g0702 870 PANTHER POTASSIUM CHANNEL AKT1 22 862 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Sed08g0702 870 ProSiteProfiles Ankyrin repeat profile. 590 622 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Sed08g0702 870 FunFam Potassium channel KAT2 368 501 - -
Sed08g0702 870 ProSiteProfiles Ankyrin repeat region circular profile. 590 617 - -
Sed08g0702 870 Gene3D - 64 301 - -
Sed08g0702 870 PRINTS Ankyrin repeat signature 670 684 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 PRINTS Ankyrin repeat signature 558 573 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 SUPERFAMILY Ankyrin repeat 528 707 IPR036770 -
Sed08g0702 870 Gene3D Jelly Rolls 348 507 IPR014710 -
Sed08g0702 870 ProSiteProfiles cAMP/cGMP binding motif profile. 380 479 IPR000595 -
Sed08g0702 870 Pfam Cyclic nucleotide-binding domain 399 482 IPR000595 -
Sed08g0702 870 SUPERFAMILY cAMP-binding domain-like 305 498 IPR018490 -
Sed08g0702 870 ProSiteProfiles Ankyrin repeat region circular profile. 557 588 - -
Sed08g0702 870 ProSiteProfiles KHA domain profile. 801 870 IPR021789 -
Sed08g0702 870 Pfam KHA, dimerisation domain of potassium ion channel 801 863 IPR021789 -
Sed08g0702 870 MobiDBLite consensus disorder prediction 740 763 - -
Sed08g0702 870 ProSiteProfiles Ankyrin repeat profile. 654 686 IPR002110 GO:0005515(InterPro)
Sed08g0702 870 CDD CAP_ED 380 482 IPR000595 -
Sed08g0702 870 FunFam Potassium channel SKOR 63 301 - -
Sed08g0702 870 ProSiteProfiles Ankyrin repeat region circular profile. 654 685 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1662 Sed-Chr5:30491060 Sed08g0702 Sed-Chr8:5101328 4.50E-135 dispersed
Sed08g0702 Sed-Chr8:5101328 Sed12g2388 Sed-Chr12:33723683 0.00E+00 dispersed
Sed12g2387 Sed-Chr12:33723683 Sed08g0702 Sed-Chr8:5101328 0.00E+00 wgd
Sed05g1681 Sed-Chr5:30609943 Sed08g0702 Sed-Chr8:5101328 3.40E-285 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0702 K21867 - csv:101220784 1583.93