Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0705 ATGGCTTTGCCCAACCAGCAGACCGTTGATTATCCCAGCTTCAAGCTCGTCCTTGTCGGCGATGGCGGCACTGGGAAAACGACCTTTGTGAAGAGACATGTCACTGGTGAATTCGAAAAGAAATATGAACCAACCATTGGTGTGGAGGTGCACCCACTGGACTTCTTCACAAATTGTGGAAAGATTAGGTTTTACTGCTGGGACACTGCTGGACAGGAGAAATTTGGTGGCCTTCGTGATGGTTACTACATTCATGGGCAATGTGCAATCATCATGTTCGATGTTACTGCTCGATTGACTTACAAAAATGTTCCTACATGGCACCGTGATCTTTGCAGGGTGTGTGAGAATATTCCCATCGTTCTTTGTGGAAACAAGGTTGATGTTAAAAATAGGCAGGTTAAGGCAAAGCAGGTGACATTCCACAGAAAGAAGAATCTTCAGTACTATGAGATATCTGCAAAGAGTAACTACAACTTTGAGAAACCCTTTCTGTACCTGGCCAGGAAATTAGCAGGAGATGCTAATATTCATTTTGTGGAGTCCCCTGCCCTTGCTCCTCCAGAAGTACAGATTGACTTGGCAGTCCAGCAACAGCATGAGGCTGAGTTGTTACAAGCAGCCAATCAACCTCTGCCGGATGACGATGATGATGCTTTCGAGTAG 666 45.5 MALPNQQTVDYPSFKLVLVGDGGTGKTTFVKRHVTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANIHFVESPALAPPEVQIDLAVQQQHEAELLQAANQPLPDDDDDAFE 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5150442 5152821 + Sed0012777.1 Sed08g0705 722481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0705 221 ProSiteProfiles small GTPase Rab1 family profile. 8 210 - -
Sed08g0705 221 SMART rab_sub_5 14 174 - -
Sed08g0705 221 Gene3D - 4 219 IPR027417 -
Sed08g0705 221 FunFam GTP-binding nuclear protein 5 219 - -
Sed08g0705 221 Pfam Ras family 15 171 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed08g0705 221 NCBIfam small GTP-binding protein domain 14 164 IPR005225 GO:0005525(InterPro)
Sed08g0705 221 ProSiteProfiles small GTPase Ras family profile. 5 205 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed08g0705 221 SMART ran_sub_2 19 220 - -
Sed08g0705 221 ProSiteProfiles small GTPase Ran family profile. 7 171 IPR002041 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006913(InterPro)
Sed08g0705 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 192 IPR027417 -
Sed08g0705 221 PANTHER RAN GTPASE 3 219 IPR002041 GO:0000054(PANTHER)|GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006606(PANTHER)|GO:0006913(InterPro)
Sed08g0705 221 SMART rho_sub_3 16 170 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed08g0705 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 74 92 IPR002041 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006913(InterPro)
Sed08g0705 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 94 115 IPR002041 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006913(InterPro)
Sed08g0705 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 130 148 IPR002041 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006913(InterPro)
Sed08g0705 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 168 190 IPR002041 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006913(InterPro)
Sed08g0705 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006913(InterPro)
Sed08g0705 221 SMART ras_sub_4 11 174 - -
Sed08g0705 221 CDD Ran 14 179 IPR002041 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0006913(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0705 K07936 - - mtr:25490031 449.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0705 Sed-Chr8:5150442 Sed12g2389 Sed-Chr12:33752928 1.90E-128 dispersed
Sed08g0704 Sed-Chr8:5144304 Sed08g0705 Sed-Chr8:5150442 7.60E-130 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g439 . Blo12g01085 . Bda03g00062 . Bpe02g00576 Bma04g00060 . . Cmo12g00273 . . . . Sed08g0705 . . Bhi04g01002 Tan02g2699 Cmetu02g1205 . Hepe10g0272 . Lcy13g1760 . . . . . . . Cone4ag1810 Cone7ag1720 Cone17ag1037 Cone20ag0661 . . . Cme03g01644 . . . . . . . . . . . . Cma12g00321 . . . . . . . . . . . . . . . . . . . . Chy03g01146 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000590 3 3 3 1 2 4 3 4 4 1 4 4 3 4 4 6 4 5 3 4 4 2 3 3 1 3 4 6 5 4 104