Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0712 ATGGAGGATAAAAAAGCCAACACAATTTTTCTTCTGCTCATCATCTTCCTCATCCTCATCCTCATCCTCGCCAGAATCTTCCTCGAACTTTCCTACGCATTTCTTCTGATTTGCAGCTTCGACGTCTCCCTAATCGCCGCGATCTTGATGTACGTGATCATCAGAACAAGATTCAACCGGAGAACCAAGCAGATCGAGTCGCAGTTGGTTTCGGAAGGTCGCGAGCTTCGAATCGAGTACAGTTTCTTGCGAAAAGTCGCCGGAGTTCCGACGAAGTTCCGGCACAAAGAGCTCGAGGAAGCCACGGACCACTTCCGAGCGCTGATCGGCCAAGGATCCTCCGGTTCCGTCTTCAGAGGAACGCTTAAAGACGGCACGGCGGTGGCGGTGAAGCGGATCGAAGGCGAGAATCGCGGCGAGAAGGAGTTCCGAGCGGAGGTATCCGCCATTGCCAGTGTTCAGCATATCAATCTCGTTCGTTTGATTGGATATTGCACGAATTCGTCTGGATCTAGATTTCTGGTTTACAATTTCGTTTCGAACGGATCTCTGGATTGCTGGATTTTCCCCAAAAAAGCTAGGGTTAGGGATCGGAATCGGCCTAGCGGTTGCTTGGCTTGGGATCTGAGATTTCGAGTCGCGATCGATGTCGCGAAAGCTTTAGCGTATCTCCACCACGATTGTAGATCTAGCGTTTTGCATCTCGATGTGAAGCCGGAGAATATACTCCTCGATGAAAATTACAGAGCGATTGTTTCCGATTTCGGATTGTCGAAGCTGATGGGGAAAGATGAGAGCCGGATAATGACGTCGATGAGAGGAACGAAGGGATATTTGGCGCCGGAGTGGTTGCTGGAGAACGGAATCTCAGAGAAATCGGACGTGTTCAGTTACGGAATGGTGGTTCTGGAACTCGTCGGCGGGCGGCGGAATGTGAGCGTGGTTGAGAACGGCGGCGGCGGCGACGACAAATCGAAGAGGAAACTGCAGTATTTTCCTCGAATCGTGAGCGAGAAGATGAAGGAAGGGAAGTTGATGGAGGCTGTGGATCGGAGGTTGTTGGAATCGGGCGTCATTGACGAGAGAGAGGTTCGGAAACTGGTTTGTGTTGGTTTGTGGTGCATTCAGGAGAAGGCGAAGCTCCGGCCGACGATGGCGGCGGTGGTGGATTTTCTTGAAGGCCGCGTCGCGGTGGAGGAGCCGCCGGATACTCAAATGCTTGTGGTTGATTTGTTGTCGATTGATGAACAGCGGCGGCGGAAGTTTGCTGCGTTTGGGGAACGGATGAACGACGGCGATCTTCCCTCGTCGTCGACGGCGCACTCTTATGCGTTTTCTGTTGTCTCTCCACGGTGA 1356 52.29 MEDKKANTIFLLLIIFLILILILARIFLELSYAFLLICSFDVSLIAAILMYVIIRTRFNRRTKQIESQLVSEGRELRIEYSFLRKVAGVPTKFRHKELEEATDHFRALIGQGSSGSVFRGTLKDGTAVAVKRIEGENRGEKEFRAEVSAIASVQHINLVRLIGYCTNSSGSRFLVYNFVSNGSLDCWIFPKKARVRDRNRPSGCLAWDLRFRVAIDVAKALAYLHHDCRSSVLHLDVKPENILLDENYRAIVSDFGLSKLMGKDESRIMTSMRGTKGYLAPEWLLENGISEKSDVFSYGMVVLELVGGRRNVSVVENGGGGDDKSKRKLQYFPRIVSEKMKEGKLMEAVDRRLLESGVIDEREVRKLVCVGLWCIQEKAKLRPTMAAVVDFLEGRVAVEEPPDTQMLVVDLLSIDEQRRRKFAAFGERMNDGDLPSSSTAHSYAFSVVSPR 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5201523 5203313 + Sed0013426.1 Sed08g0712 722488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0712 451 PANTHER OS07G0415500 PROTEIN 13 407 - -
Sed08g0712 451 SUPERFAMILY Protein kinase-like (PK-like) 86 393 IPR011009 -
Sed08g0712 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0712 451 FunFam Putative receptor-like protein kinase 70 178 - -
Sed08g0712 451 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Sed08g0712 451 SMART serkin_6 103 392 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0712 451 FunFam Putative receptor-like protein kinase 179 400 - -
Sed08g0712 451 Gene3D Transferase(Phosphotransferase) domain 1 179 409 - -
Sed08g0712 451 ProSiteProfiles Protein kinase domain profile. 103 444 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0712 451 Pfam Protein kinase domain 107 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0712 451 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0712 Sed-Chr8:5201523 Sed13g0101 Sed-Chr13:671105 1.40E-77 dispersed
Sed12g2395 Sed-Chr12:33796123 Sed08g0712 Sed-Chr8:5201523 1.30E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79606 PF00069 Pkinase 4.70E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0712 - - - 0.0