Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0731 ATGGCTTCTATTTCCTTCGTTTCACTTCCCCTGTTTCTTCTTCTTATTCTTCTTCTTCATTCTGTTCAATCGGAGCCCACCGCCGACAAGGAAGCGCTTCTCGATTTCTTGAACAAAACCCCACATGGGAACCGCCTTCGATGGAATGCTTCTGCCTCCGCTTGTTCTTGGGTTGGAGTTTCCTGCGATTCCGATCAGTCCTCTGTTTTCTCTCTCCGGTTGCCTGCCGTTGGCCTCGTCGGTCCGATTCCGGCCAACACTCTCGGCCGCTTGAATCGCCTTCGGGTTCTCAGTCTCCGTTCCAATCGAATTTTCGGCGCCTTGCCGGCGGATTTTTCTAATTTGACGTTTCTTCGGAGTCTGTATCTTCAGGACAATGCCCTCTCCGGTGGGTTCCCCGCGAGTGTGACTCAGTTGACTCGGTTGGCTCGTCTCGACCTTTCCTCGAACAATTTCTCCGGTCCGATTCCGTTTTCTGTAAACAATTTGACCCAATTGACTGGGTTGTTTCTGGAAAACAATGGGTTTTCGGGTTCTTTGCCGAGTATTCCAGCAATTAGTTTAACGAGCTTCAACGTCTCGAATAATCAACTCAATGGATCCATTCCCAATAGCCTTACGAAATTCTCCGCTTCATCATTCGCCGGAAATTTAGCTCTCTGCGGCCGTCCATTACCGCCGTGCAACCCGTTTTTCCCCTCCCCTGTTTCGCCGCCGACGCCGGCAGAAAGACCCCCAGAAACCCCCGTCGAGAAAGCCCCAAAAAAGCTCTCCGTCGCCGCCATTATCGGAATAGCCATCGGCGCTGCTTTTATTCTCTTCATACTCCTCCTCCTCCTCCTAATCTGCCTCCGAAACTGCCGCGCTCGGCGGCCGGCAAAGCCGCCGAGCACGGTGGCAGCAGCGAGATCTGCCCTGGCGGAGGGCGGCACATCGTCGTCGAAAGACGACATCACCGGCGGGTCAATGGAGGCGGAGAAGAACAGATTGGTGTTCTTCGAAGGTGGGATTTACAGCTTCGATTTGGAGGATCTGTTGAGGGCGTCGGCGGAGGTGTTGGGGAAAGGGAGCGTCGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGCTCCACCGTCGTGGTTAAGCGGTTGAAGGATGTGGAAATGGCGAAGAAGGATTTCGAGGCGTTAATGGAGGTTTTGGGAAATGTCAAACACGAAAATGTGGTTTCTCTCAGAGCGTTTTACTTTTCCAGAGATGAGAAATTGCTCGTTTCCGATTACGTCGCCGCCGGTAGCCTTTCCGCTTCACTTCACGGAAGCAGAGGATCGGGCCGAACGCCACTAGACTGGGACAACCGGTTAAAAATCGCACTAAACGCAGCAAAAGGGATAGGTCACCTCCACGTGTCGGGAAAACTGGTCCACGGCAACATCAAATCGTCCAACATCCTCCTCCGCGCCAACCACGACGCCGCCGTCTCCGACTACGGCCTCAACTCTCTCTTTGGCGCCTCAGCGCCGCCGAATCGGATGGCGGGCTACCGCGCGCCGGAGGTTGTGGAAACCGGAAAGGTCACATTCCAATCCGACGTGTACAGTTTTGGCGTCTTGCTGTTGGAGCTTTTGACCGGGAAATCGCCGAACCAGGCGTCGTTGGGCGAAGAAGGGATTGACCTTCCCCGGTGGGTCCAGTCGGTGGTCCGGGAAGAATGGACGGCCGAGGTTTTTGACGTGGAATTGATGAGATACCATAATATTGAAGAGGAGATGGTTCAGTTGTTGCAAATTGCAATGGCTTGTGTCGCCATTGTGCCGGACCAGCGGCCGTCGATGACGGAGGTGGTTCGCATGATTGAGGATTTGAACCGTGTCGAGACGGATGACCCGTCGAAAGGATCGGAGGGCCACACGCCGCCACAGGAGGCCAGAACCACCCCTCCCGGAGCCGTCGGAGCACCGTAG 1944 54.84 MASISFVSLPLFLLLILLLHSVQSEPTADKEALLDFLNKTPHGNRLRWNASASACSWVGVSCDSDQSSVFSLRLPAVGLVGPIPANTLGRLNRLRVLSLRSNRIFGALPADFSNLTFLRSLYLQDNALSGGFPASVTQLTRLARLDLSSNNFSGPIPFSVNNLTQLTGLFLENNGFSGSLPSIPAISLTSFNVSNNQLNGSIPNSLTKFSASSFAGNLALCGRPLPPCNPFFPSPVSPPTPAERPPETPVEKAPKKLSVAAIIGIAIGAAFILFILLLLLLICLRNCRARRPAKPPSTVAAARSALAEGGTSSSKDDITGGSMEAEKNRLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGSTVVVKRLKDVEMAKKDFEALMEVLGNVKHENVVSLRAFYFSRDEKLLVSDYVAAGSLSASLHGSRGSGRTPLDWDNRLKIALNAAKGIGHLHVSGKLVHGNIKSSNILLRANHDAAVSDYGLNSLFGASAPPNRMAGYRAPEVVETGKVTFQSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVAIVPDQRPSMTEVVRMIEDLNRVETDDPSKGSEGHTPPQEARTTPPGAVGAP 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5339585 5343148 + Sed0002036.1 Sed08g0731 722507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0731 647 MobiDBLite consensus disorder prediction 232 251 - -
Sed08g0731 647 SUPERFAMILY Protein kinase-like (PK-like) 351 612 IPR011009 -
Sed08g0731 647 FunFam Probable inactive receptor kinase RLK902 26 184 - -
Sed08g0731 647 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 422 625 - -
Sed08g0731 647 MobiDBLite consensus disorder prediction 292 321 - -
Sed08g0731 647 Gene3D Transferase(Phosphotransferase) domain 1 423 630 - -
Sed08g0731 647 Gene3D Ribonuclease Inhibitor 187 228 IPR032675 -
Sed08g0731 647 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Sed08g0731 647 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515(InterPro)
Sed08g0731 647 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Sed08g0731 647 Pfam Protein tyrosine and serine/threonine kinase 351 611 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0731 647 FunFam pollen receptor-like kinase 1 317 421 - -
Sed08g0731 647 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Sed08g0731 647 MobiDBLite consensus disorder prediction 232 247 - -
Sed08g0731 647 MobiDBLite consensus disorder prediction 616 647 - -
Sed08g0731 647 Gene3D Phosphorylase Kinase; domain 1 314 421 - -
Sed08g0731 647 SUPERFAMILY L domain-like 39 225 - -
Sed08g0731 647 ProSiteProfiles Protein kinase domain profile. 347 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0731 647 PANTHER OS05G0588300 PROTEIN 11 624 IPR050994 -
Sed08g0731 647 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Sed08g0731 647 CDD STKc_IRAK 353 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1779 Sed-Chr1:13018392 Sed08g0731 Sed-Chr8:5339585 2.80E-124 dispersed
Sed06g1908 Sed-Chr6:43437395 Sed08g0731 Sed-Chr8:5339585 4.80E-103 dispersed
Sed08g0731 Sed-Chr8:5339585 Sed14g0561 Sed-Chr14:5658830 1.40E-131 dispersed
Sed12g1625 Sed-Chr12:27345059 Sed08g0731 Sed-Chr8:5339585 1.20E-36 dispersed
Sed11g0086 Sed-Chr11:807827 Sed08g0731 Sed-Chr8:5339585 1.20E-191 wgd
Sed12g2419 Sed-Chr12:33925304 Sed08g0731 Sed-Chr8:5339585 1.00E-230 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79607 PF00069 Pkinase 4.10E-35 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0731 - - - 0.0