Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0735 ATGCCCTACATGCAAATGGAGCCAGAAGAGAAACATGTGATACAATCTCCTCAAATGGTGTTGAAATCCCTACATGGCTCAAAAGATGATGAGAAGACTGGTTTATGGAAAAGGATAGGGAAAAGAAGAGCAAAAGGACCTGCCATGGAAGGACTGAAGCAAGAGGAGCTTGATCCCAATTTGGAGTTTCCATCTTCTTCTTCCTGCAAAAGCTTAACATTTCCAAGAAGGCCAAACTTTGGTCAGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCAAAAATACCTGAATCAGACATAAGCCATTACAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAATATATTGACCGAGTTGGTCAACCATTATAGAAGCACAGAGTTGGGAATGCGATTGCCAGTTTATGATGGAGGAAGCAATATGTACACAGCCGGATTGCTGCCTTTCACATCAAAAGAGTTCACTGTCATTTTAGCTGATGAGGAAAATGGATTAGCCACTACCAGGCAATTTCACTTCTTTTCTTCATGTATTTCTGCTATTTCTTTGGAAAAAGAATTTAAAGTTCAGATAAAGTTTGTAACTTTGGCTAGCATGCACCAGCTACGAGAATTACTTGCTGGTAAACAAGTTAATAACCCACAAGAAGCTTTGACCATTATTGACATTGTCTTGAAGGAGCTTCATTCTCAAAGATATATATCTGTTGGGCGATTCTTTTACTCCCCTTGCATTAAGAAACCTCAGCATGTTGGGGGTGGTTTGCAAGCATGGCGTGGATTCTATCAAAGCATCAGACCTACTCAAATGGGATTGTCACTAAATATTGACATGGCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTTGCTCAAATCTTAAACAAAGATGTGTATTCAAGACCATTAACAGATGCTGATCGTATCAAGGTTAAAAAAGTACTTAGAGGTGTAAAAGTGGAAGTCACACACAGAAGAAATGTACGAAGGAAATATCGAATCTCGGGACTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAGTACTTCCAAGAGATGTATGGATATACCATTCACTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAACTATCTACCCATGGAGGCATGTAAGATACTTAAAGGACAAAGATACACGAAGGGACTGAATGAAAAGCAAATAACTTCCTTGTTGATGGTTTCATGCCAAAGACCATCTGATCAAGAAATGGATATTTTACAGACTGTTCATCAGAATGCATATGAGGAAGATCCATATGCAAAAGAGTTCGGTATCAGCATCGACAATAAGCTTACATCAGTTGAAGCAAGAGTTCTTCCTTCTCCATGGCTAAAATTTCATGACACCGGAAAAGAAAAGGAACATCTGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAAATGGAAGCGTTGTAAGATACTGGGCTTGTATCAATTTCTCACGCAATGTCCAAGATAGCATAGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATCACTGGAATGGAATTTCACCCAGATCCTTCAATTCCTGTATACTCAGCAAGACCAGATCAAGTGAAGAAAGCCTTAAAATATGTATGTAGTGCAGTTTATAACAAACATGAAGGAAAAGAGTTAGAGTTACTGATAGCTATTCTTCCGGACAACAACGGCTCTTTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCTCAATGTTGTCTAACAAAGCATGTTTTCAAGAAGAGCAGACAGTACTTGGCGAATGTGTCGCTTAAGATCAACGTCAAGATGGGTGGAAGAAACACAGTTCTGTTAGATGCCTTGCGGTCAAGAATTCCATTAGTCAGTGACATACCAACTATAATCTTTGGAGCTGATGTCACTCATCCAGAATCTGGAGAGGATTCTCTTCCATCAATAGCTGCTGTTGTAGCTTCCCAAGATTGGCCAGAAGTTACAAAATATGCTGGATTAGTATGTGCTCAGCCTCACCGAGAAGAACTGATTCAAGATTTATTCAAAACGTGGAAAGATCCTCAACGGGGTACGGTTGCTGGGGGTATGATAAGGGAACTCTTGCTTTCATTTAAGAAAGCCACTGGACAGAAACCATTAAGGATAATATTCTACAGGGATGGTGTCAGTGACGGTCAGTTCTACCAAGTTCTACTGCACGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTATCAACCACCAGTAACTTTTATCATTGTTCAAAAACGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCACTGACCAGAGCGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGCCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCAGCTCATTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCTGATGACATCCAATCTCTGACTAATAACCTCTGTTACACGTATGCTCGATGCACAAGATCAGTCTCAGTAGTGCCTCCAGCCTACTACGCTCATTTAGCGGCGTACAGGGCTCGATTCTACGTGGAACCAGACGCCCAAGAGAACGCCAAGAGGTGCTGCACTCGAGCCGCAAGTGGGTCCTGCGTCCGGCCTCTGCCTGCACTCAAAGAGAGACTAAAAAATGTAATGTTCTATTGTTGA 2826 41.19 MPYMQMEPEEKHVIQSPQMVLKSLHGSKDDEKTGLWKRIGKRRAKGPAMEGLKQEELDPNLEFPSSSSCKSLTFPRRPNFGQLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKMKKNILTELVNHYRSTELGMRLPVYDGGSNMYTAGLLPFTSKEFTVILADEENGLATTRQFHFFSSCISAISLEKEFKVQIKFVTLASMHQLRELLAGKQVNNPQEALTIIDIVLKELHSQRYISVGRFFYSPCIKKPQHVGGGLQAWRGFYQSIRPTQMGLSLNIDMASTAFIEAIPVIDFVAQILNKDVYSRPLTDADRIKVKKVLRGVKVEVTHRRNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIHYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLMVSCQRPSDQEMDILQTVHQNAYEEDPYAKEFGISIDNKLTSVEARVLPSPWLKFHDTGKEKEHLPQVGQWNMMNKKVINGSVVRYWACINFSRNVQDSIARGFCQQLVQMCQITGMEFHPDPSIPVYSARPDQVKKALKYVCSAVYNKHEGKELELLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPQRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSDGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSTDQSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADDIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAQENAKRCCTRAASGSCVRPLPALKERLKNVMFYC 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5398138 5404183 + Sed0010753.1 Sed08g0735 722511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0735 941 SMART PAZ_2_a_3 299 431 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed08g0735 941 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 77 910 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Sed08g0735 941 Pfam Argonaute linker 2 domain 438 481 IPR032472 -
Sed08g0735 941 FunFam Protein argonaute-2 288 414 - -
Sed08g0735 941 Pfam Piwi domain 584 902 IPR003165 GO:0003676(InterPro)
Sed08g0735 941 FunFam protein argonaute 10-like 652 941 - -
Sed08g0735 941 Pfam N-terminal domain of argonaute 86 233 IPR032474 -
Sed08g0735 941 ProSiteProfiles Piwi domain profile. 583 904 IPR003165 GO:0003676(InterPro)
Sed08g0735 941 Pfam PAZ domain 299 425 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed08g0735 941 SMART Piwi_a_2 583 904 IPR003165 GO:0003676(InterPro)
Sed08g0735 941 SUPERFAMILY Ribonuclease H-like 575 905 IPR012337 -
Sed08g0735 941 CDD PAZ_argonaute_like 294 408 - -
Sed08g0735 941 CDD Piwi_ago-like 453 902 IPR045246 -
Sed08g0735 941 ProSiteProfiles PAZ domain profile. 296 409 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed08g0735 941 SMART DUF1785_2 242 294 IPR014811 -
Sed08g0735 941 Gene3D - 473 646 - -
Sed08g0735 941 Pfam Argonaute linker 1 domain 243 293 IPR014811 -
Sed08g0735 941 Gene3D - 652 941 IPR036397 GO:0003676(InterPro)
Sed08g0735 941 FunFam Argonaute 10 473 646 - -
Sed08g0735 941 Pfam Mid domain of argonaute 492 569 IPR032473 -
Sed08g0735 941 Gene3D paz domain 288 413 - -
Sed08g0735 941 SUPERFAMILY PAZ domain 289 449 IPR036085 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0735 Sed-Chr8:5398138 Sed12g0978 Sed-Chr12:6126796 0.00E+00 dispersed
Sed08g0735 Sed-Chr8:5398138 Sed02g1347 Sed-Chr2:49802944 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0735 K11593 - csv:101213206 1731.07