Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0735 | ATGCCCTACATGCAAATGGAGCCAGAAGAGAAACATGTGATACAATCTCCTCAAATGGTGTTGAAATCCCTACATGGCTCAAAAGATGATGAGAAGACTGGTTTATGGAAAAGGATAGGGAAAAGAAGAGCAAAAGGACCTGCCATGGAAGGACTGAAGCAAGAGGAGCTTGATCCCAATTTGGAGTTTCCATCTTCTTCTTCCTGCAAAAGCTTAACATTTCCAAGAAGGCCAAACTTTGGTCAGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCAAAAATACCTGAATCAGACATAAGCCATTACAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAATATATTGACCGAGTTGGTCAACCATTATAGAAGCACAGAGTTGGGAATGCGATTGCCAGTTTATGATGGAGGAAGCAATATGTACACAGCCGGATTGCTGCCTTTCACATCAAAAGAGTTCACTGTCATTTTAGCTGATGAGGAAAATGGATTAGCCACTACCAGGCAATTTCACTTCTTTTCTTCATGTATTTCTGCTATTTCTTTGGAAAAAGAATTTAAAGTTCAGATAAAGTTTGTAACTTTGGCTAGCATGCACCAGCTACGAGAATTACTTGCTGGTAAACAAGTTAATAACCCACAAGAAGCTTTGACCATTATTGACATTGTCTTGAAGGAGCTTCATTCTCAAAGATATATATCTGTTGGGCGATTCTTTTACTCCCCTTGCATTAAGAAACCTCAGCATGTTGGGGGTGGTTTGCAAGCATGGCGTGGATTCTATCAAAGCATCAGACCTACTCAAATGGGATTGTCACTAAATATTGACATGGCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTTGCTCAAATCTTAAACAAAGATGTGTATTCAAGACCATTAACAGATGCTGATCGTATCAAGGTTAAAAAAGTACTTAGAGGTGTAAAAGTGGAAGTCACACACAGAAGAAATGTACGAAGGAAATATCGAATCTCGGGACTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAGTACTTCCAAGAGATGTATGGATATACCATTCACTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAACTATCTACCCATGGAGGCATGTAAGATACTTAAAGGACAAAGATACACGAAGGGACTGAATGAAAAGCAAATAACTTCCTTGTTGATGGTTTCATGCCAAAGACCATCTGATCAAGAAATGGATATTTTACAGACTGTTCATCAGAATGCATATGAGGAAGATCCATATGCAAAAGAGTTCGGTATCAGCATCGACAATAAGCTTACATCAGTTGAAGCAAGAGTTCTTCCTTCTCCATGGCTAAAATTTCATGACACCGGAAAAGAAAAGGAACATCTGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAAATGGAAGCGTTGTAAGATACTGGGCTTGTATCAATTTCTCACGCAATGTCCAAGATAGCATAGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATCACTGGAATGGAATTTCACCCAGATCCTTCAATTCCTGTATACTCAGCAAGACCAGATCAAGTGAAGAAAGCCTTAAAATATGTATGTAGTGCAGTTTATAACAAACATGAAGGAAAAGAGTTAGAGTTACTGATAGCTATTCTTCCGGACAACAACGGCTCTTTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCTCAATGTTGTCTAACAAAGCATGTTTTCAAGAAGAGCAGACAGTACTTGGCGAATGTGTCGCTTAAGATCAACGTCAAGATGGGTGGAAGAAACACAGTTCTGTTAGATGCCTTGCGGTCAAGAATTCCATTAGTCAGTGACATACCAACTATAATCTTTGGAGCTGATGTCACTCATCCAGAATCTGGAGAGGATTCTCTTCCATCAATAGCTGCTGTTGTAGCTTCCCAAGATTGGCCAGAAGTTACAAAATATGCTGGATTAGTATGTGCTCAGCCTCACCGAGAAGAACTGATTCAAGATTTATTCAAAACGTGGAAAGATCCTCAACGGGGTACGGTTGCTGGGGGTATGATAAGGGAACTCTTGCTTTCATTTAAGAAAGCCACTGGACAGAAACCATTAAGGATAATATTCTACAGGGATGGTGTCAGTGACGGTCAGTTCTACCAAGTTCTACTGCACGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTATCAACCACCAGTAACTTTTATCATTGTTCAAAAACGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCACTGACCAGAGCGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGCCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCAGCTCATTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCTGATGACATCCAATCTCTGACTAATAACCTCTGTTACACGTATGCTCGATGCACAAGATCAGTCTCAGTAGTGCCTCCAGCCTACTACGCTCATTTAGCGGCGTACAGGGCTCGATTCTACGTGGAACCAGACGCCCAAGAGAACGCCAAGAGGTGCTGCACTCGAGCCGCAAGTGGGTCCTGCGTCCGGCCTCTGCCTGCACTCAAAGAGAGACTAAAAAATGTAATGTTCTATTGTTGA | 2826 | 41.19 | MPYMQMEPEEKHVIQSPQMVLKSLHGSKDDEKTGLWKRIGKRRAKGPAMEGLKQEELDPNLEFPSSSSCKSLTFPRRPNFGQLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKMKKNILTELVNHYRSTELGMRLPVYDGGSNMYTAGLLPFTSKEFTVILADEENGLATTRQFHFFSSCISAISLEKEFKVQIKFVTLASMHQLRELLAGKQVNNPQEALTIIDIVLKELHSQRYISVGRFFYSPCIKKPQHVGGGLQAWRGFYQSIRPTQMGLSLNIDMASTAFIEAIPVIDFVAQILNKDVYSRPLTDADRIKVKKVLRGVKVEVTHRRNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIHYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLMVSCQRPSDQEMDILQTVHQNAYEEDPYAKEFGISIDNKLTSVEARVLPSPWLKFHDTGKEKEHLPQVGQWNMMNKKVINGSVVRYWACINFSRNVQDSIARGFCQQLVQMCQITGMEFHPDPSIPVYSARPDQVKKALKYVCSAVYNKHEGKELELLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPQRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSDGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSTDQSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADDIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAQENAKRCCTRAASGSCVRPLPALKERLKNVMFYC | 941 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5398138 | 5404183 | + | Sed0010753.1 | Sed08g0735 | 722511 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0735 | 941 | SMART | PAZ_2_a_3 | 299 | 431 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed08g0735 | 941 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 77 | 910 | - | GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER) | |
Sed08g0735 | 941 | Pfam | Argonaute linker 2 domain | 438 | 481 | IPR032472 | - | |
Sed08g0735 | 941 | FunFam | Protein argonaute-2 | 288 | 414 | - | - | |
Sed08g0735 | 941 | Pfam | Piwi domain | 584 | 902 | IPR003165 | GO:0003676(InterPro) | |
Sed08g0735 | 941 | FunFam | protein argonaute 10-like | 652 | 941 | - | - | |
Sed08g0735 | 941 | Pfam | N-terminal domain of argonaute | 86 | 233 | IPR032474 | - | |
Sed08g0735 | 941 | ProSiteProfiles | Piwi domain profile. | 583 | 904 | IPR003165 | GO:0003676(InterPro) | |
Sed08g0735 | 941 | Pfam | PAZ domain | 299 | 425 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed08g0735 | 941 | SMART | Piwi_a_2 | 583 | 904 | IPR003165 | GO:0003676(InterPro) | |
Sed08g0735 | 941 | SUPERFAMILY | Ribonuclease H-like | 575 | 905 | IPR012337 | - | |
Sed08g0735 | 941 | CDD | PAZ_argonaute_like | 294 | 408 | - | - | |
Sed08g0735 | 941 | CDD | Piwi_ago-like | 453 | 902 | IPR045246 | - | |
Sed08g0735 | 941 | ProSiteProfiles | PAZ domain profile. | 296 | 409 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed08g0735 | 941 | SMART | DUF1785_2 | 242 | 294 | IPR014811 | - | |
Sed08g0735 | 941 | Gene3D | - | 473 | 646 | - | - | |
Sed08g0735 | 941 | Pfam | Argonaute linker 1 domain | 243 | 293 | IPR014811 | - | |
Sed08g0735 | 941 | Gene3D | - | 652 | 941 | IPR036397 | GO:0003676(InterPro) | |
Sed08g0735 | 941 | FunFam | Argonaute 10 | 473 | 646 | - | - | |
Sed08g0735 | 941 | Pfam | Mid domain of argonaute | 492 | 569 | IPR032473 | - | |
Sed08g0735 | 941 | Gene3D | paz domain | 288 | 413 | - | - | |
Sed08g0735 | 941 | SUPERFAMILY | PAZ domain | 289 | 449 | IPR036085 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0735 | Sed-Chr8:5398138 | Sed12g0978 | Sed-Chr12:6126796 | 0.00E+00 | dispersed | |
Sed08g0735 | Sed-Chr8:5398138 | Sed02g1347 | Sed-Chr2:49802944 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0735 | K11593 | - | csv:101213206 | 1731.07 |