Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0747 ATGGGAAGTTCAAAGCATCTAGCGGTGGGGACGGTGGCGGCGTGTTCGCTTCTGATATCGCAAATTATCGGAAAAGTGGCGTCGCCGGAGCAGGAACCAACCTTATATCTCCACCTGGTTTACACCGCCACCTTCATCACCGGTCTCATGCAAGCTGCCTTAGGCATGCTAAGATTGGGAATTTTGGTGGATTTCTTGTCGCATTCGACGATCATTGGGTTCATGGGAGGGACGGCTGTGATCATTTGCTTACAACAACTCAAAGGCATGCTTGGACTCACTCATTTCACCCATAAAACCGACGTCTATTCCGTTTTACATGCCGTTTTTGCCCTTCGAACCCAGTGGAAATGGCAAAGTGCTGCGGTGGGCATCGTCTTCCTCGTTTTCCTCCAATTTACTAGGTACCTGAGAAACAAAAACCCAAAGCTATTTTGGGTGTCGGCAATGGCTCCAATGGTGACGGTGATAGTCGGGTGTTTGTTTGCGTATTTCATCGATGGAACTCACCATGGAATCTTAACAGTGGGTAAGTTGAGCAAAGGAATAAACCCTCTTTCTATTCACTTATTGAACTTTGACTCAAAATATCTATCAGCCGTCATACAAGCTGCCTTTATCACTGCCCTTTTAGCTTTGGCTGAAGGAATAGCAATCGGTCGAAGCTTTGCGATAATGAAAAACGAACAAGTCGATGGCAACAAGGAAATGGTAGCCTTTGGATTGATGAACATCGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACTGCAGTCAACTTCAATGCTGGTTGCAGAACAGCAATGTCAAACATAGTAATGGCAATCTTCATGGCTCTCACCCTCCTCTTTCTTGCTCCTCTCTTCAGCTACACTCCTCTCGTAGCCCTTTCCGCCATTATCATGTCCGCCATGTTTGGTCTGATCAAATACGAAGAAATCTATCATCTTCTCAAGGTTGACAAGTTCGATTTCTGCATTTGTATGGCCGCTTTCTTGGGTGTTGCCCTGTTGAGCATGGATGTTGGCATCATGCTTTCGGTGGGTCTTGCTTTGCTGAGAGCTCTACTTTACATGGCCAGACCAGCAACATGCAAGCTTGGGAAAATACCAAACACTTCTTTGTACAGAGACGTAGAGCAATACCGTAATGCAACCAGAACCCCAGGAATTATTGTTCTTCAACTCGGTTCTCCTATTTATTATGCTAACTCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGAATGCCATATCTGATTCCAAAGATGGATCAGTCCAACACGTACTGCTGGAATTGAGTGGGGTTACGTCCATCGACATGACGGGGATCGAAACTCTAGTCGAAATCCGAAGATCGTTACAAGCAATCGGAATTCAGATGGGAATTGTAAACCCGAGAATCGTAGTGATGGAAAAGATGGTAGCATCAGAATTCACAGAACTGATAGGGAATGAAAACTTCTATTTATCGGTGGATGATGGGGTGGAAAAATTCATGGATTTGGCGTACAAATCAAAGCATACAGATTCGAGTGATGGAAGCTCCGATGTGAGGAACAATGAAGAAGGCGCGGTGTGA 1608 45.27 MGSSKHLAVGTVAACSLLISQIIGKVASPEQEPTLYLHLVYTATFITGLMQAALGMLRLGILVDFLSHSTIIGFMGGTAVIICLQQLKGMLGLTHFTHKTDVYSVLHAVFALRTQWKWQSAAVGIVFLVFLQFTRYLRNKNPKLFWVSAMAPMVTVIVGCLFAYFIDGTHHGILTVGKLSKGINPLSIHLLNFDSKYLSAVIQAAFITALLALAEGIAIGRSFAIMKNEQVDGNKEMVAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPLFSYTPLVALSAIIMSAMFGLIKYEEIYHLLKVDKFDFCICMAAFLGVALLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNTSLYRDVEQYRNATRTPGIIVLQLGSPIYYANSNYIRERIFRWVRDENAISDSKDGSVQHVLLELSGVTSIDMTGIETLVEIRRSLQAIGIQMGIVNPRIVVMEKMVASEFTELIGNENFYLSVDDGVEKFMDLAYKSKHTDSSDGSSDVRNNEEGAV 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5574525 5583430 - Sed0012502.1 Sed08g0747 722523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0747 535 Pfam Sulfate permease family 1 336 IPR011547 GO:0016020(InterPro)
Sed08g0747 535 Pfam STAS domain 388 503 IPR002645 -
Sed08g0747 535 ProSiteProfiles STAS domain profile. 386 508 IPR002645 -
Sed08g0747 535 MobiDBLite consensus disorder prediction 516 535 - -
Sed08g0747 535 SUPERFAMILY SpoIIaa-like 391 507 IPR036513 -
Sed08g0747 535 NCBIfam sulfate permease 1 503 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g0747 535 FunFam Sulfate transporter 31 366 510 - -
Sed08g0747 535 Gene3D STAS domain 366 510 IPR036513 -
Sed08g0747 535 CDD STAS_SulP_like_sulfate_transporter 387 501 - -
Sed08g0747 535 PANTHER SULFATE TRANSPORTER 1 507 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0747 Sed-Chr8:5574525 Sed12g1862 Sed-Chr12:29819678 3.40E-216 dispersed
Sed12g1857 Sed-Chr12:29818860 Sed08g0747 Sed-Chr8:5574525 3.60E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0747 K17471 - csv:116402148 871.692