Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed08g0748 | ATGGAGAATCATTGCAATGGAAATTCTGAATCCCATGTCTACATACCCAAAATCAAATTCACAAAGCTCTTCATAAATGGACAATTTGTTGACTCTGTTACAGGAAAAACATTTGAGACGATTGATCCAAGAAACGGTGAGGTTATCACGACGATCGCCGCCGGTGACAAAGAAGATGTGGATCTCGCCGTCAAAGCTGCCCGTCAAGCCTTCGATCACGGCCCTTGGCCCCGCATGTCCGGTGATGAGAGGGGGAAGATAATGATGAAGCTAGCGGACTTGATGGACGAACACGTGGAGGAATTAGCAGCGTTGGATGCGATGGACGCGGGGAAATCGTTTAAGATGGGGAAGATGTCGGACATACCGTCGGCTGCAAAGACGCTACGGTACTACGCAGGAGCAGCGGATAAAATCCACGGAGAGGTGTTGAAAATGTCAAAGCCGGCTCACGGCTACACATTGCTGGAGCCGATTGGCGTGGTGGGCCACATCATTCCCTGGAACTTTCCGACCACGCTGTTCTTCGTCAAAGCCAGCCCGGCCTTGGCCGCTGGCTGCACCATGCTCCTCAAGCCCGCCGAGCAGACCCCGCTCTCCGCCCTCTTCTACGCCCATCTCGCCAAACTGGCTGGTATTCCCGATGGAGTGCTGAACGTAGTGACTGGATACGGGTCAACGGCAGGATCAGCCATTGCGTCTCACATGGACATTGACAAGGTGAGTTTCACAGGATCAACGATTGTGGGAAGGCTGATAATGAAGGCAGCAAGTGAGAGTAATCTAAAGCAAGTATCATTAGAATTAGGAGGAAAATCTCCCCTTTTAATATTTAATGATGCCGATATTGATAAAGCCGTGGATCTTGCTCTCCTCGGCATATTTTATAACAAGGGAGAAATTTGCGTGGCCAGCTCTCGAGTGTTAGTTCAAGAAGGAATTTATGATGAATTTGTGAAAAAGATTAGCGAAAAGGCAAAATCTTGGATTGTTGGAGACCCTTTTGATCCCGAAACTCAATATGGACCTCAATACATAGAGCATGGTAAAAATGAAGGAGCCACATTATTGACAGGTGGCAAGCGTATTGGTGACGTCGGGTATTACATAGAACCAACCATTTTCACAGATGTTAAGGAAGATTCATTGATCGCACAGGACGAAATCTTTGGGCCAGTTCTCTCTATCATAAAATTCAAAACTATTGAAGAGGGAATAAAGAGTGCAAACAACACCAAGTACGGGCTGGCAGCTGGAATAGTGACGAACAATATAGACATAATGAACACGGTTTCGAGGTCGATCCGAGCCGGAACCATTTGGGTCAACTGTTACTTTGCTTTCGACTCGAGCTGTCCGTTCGGAGGCTACAAATCGAGTGGCTTCGGTAGAGACTACGGAATGCACGCGGTTCATAAGTATCTTCAAACCAAAGCCGTTGTCACTCCTTTGGTTAACACTCCTTGGCTTTGA | 1473 | 47.59 | MENHCNGNSESHVYIPKIKFTKLFINGQFVDSVTGKTFETIDPRNGEVITTIAAGDKEDVDLAVKAARQAFDHGPWPRMSGDERGKIMMKLADLMDEHVEELAALDAMDAGKSFKMGKMSDIPSAAKTLRYYAGAADKIHGEVLKMSKPAHGYTLLEPIGVVGHIIPWNFPTTLFFVKASPALAAGCTMLLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGSTAGSAIASHMDIDKVSFTGSTIVGRLIMKAASESNLKQVSLELGGKSPLLIFNDADIDKAVDLALLGIFYNKGEICVASSRVLVQEGIYDEFVKKISEKAKSWIVGDPFDPETQYGPQYIEHGKNEGATLLTGGKRIGDVGYYIEPTIFTDVKEDSLIAQDEIFGPVLSIIKFKTIEEGIKSANNTKYGLAAGIVTNNIDIMNTVSRSIRAGTIWVNCYFAFDSSCPFGGYKSSGFGRDYGMHAVHKYLQTKAVVTPLVNTPWL | 490 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5615614 | 5622144 | - | Sed0009425.1 | Sed08g0748 | 722524 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed08g0748 | 490 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 21 | 482 | - | GO:0004029(PANTHER) | |
| Sed08g0748 | 490 | FunFam | ALD5p Mitochondrial aldehyde dehydrogenase | 25 | 292 | - | - | |
| Sed08g0748 | 490 | FunFam | Aldehyde dehydrogenase3 | 271 | 449 | - | - | |
| Sed08g0748 | 490 | SUPERFAMILY | ALDH-like | 13 | 486 | IPR016161 | GO:0016491(InterPro) | |
| Sed08g0748 | 490 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 25 | 478 | IPR016162 | GO:0016491(InterPro) | |
| Sed08g0748 | 490 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 295 | 306 | IPR016160 | GO:0016491(InterPro) | |
| Sed08g0748 | 490 | FunFam | Aldehyde dehydrogenase, putative | 452 | 478 | - | - | |
| Sed08g0748 | 490 | Pfam | Aldehyde dehydrogenase family | 30 | 480 | IPR015590 | GO:0016491(InterPro) | |
| Sed08g0748 | 490 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 271 | 449 | IPR016163 | GO:0016620(InterPro) | |
| Sed08g0748 | 490 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 267 | 274 | IPR029510 | GO:0016491(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed08g0748 | Sed-Chr8:5615614 | Sed12g1882 | Sed-Chr12:30009036 | 4.70E-156 | dispersed | |
| Sed12g1865 | Sed-Chr12:29840797 | Sed08g0748 | Sed-Chr8:5615614 | 2.30E-254 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed08g0748 | K12355 | - | csv:101219029 | 843.188 |