Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0776 ATGTCAATACCGTTAGAACATGATTATATAGGCTTAACAGAGGAGTCTGTTCCTTCCCAGGAAGGCTCTGAAAAGTCCAATGACAGACGAAACAATGCTGGGTTGAACCTTAAGGCCACGGAGCTGAGGTTGGGTCTGCCTGGTTTGGAGTCGCCGGTGAGGGACGATGGGCTCGAGGACAATAATGGGTACCCTCTTAAGAGCTCTGTTTCCGGGGCCAAGAGGGGTTTCTCTGTTGCCATTGATAGAGCTTCTGCGAGGTGGGTTCTGCCTGCCTCTGCTGGCTCTGAGGCTGATTCCATAAAAAATGGGGGCCTGTTTTCTCCGAGAGGGGTTATTGAGAATGGAACTAAACCTCCTGTTTCGGCTGTTTGTGGTGCTAAAGAGGGTGTTTCTCCTTCGGCTAAGCCTCCGCTTTCTGCCCCTGCAGCCAAGGCACAAGTTGTAGGATGGCCACCCATTCGCTCTTTTCGTAAGAATTCGATGGCAACACAGCCTCCTAAAAGTACAGATGATGCAGACGACAAGTTGGGATCAGGTTGCATCTATGTCAAGGTAAGTATGGATGGCGCACCATACCTCAGGAAGGTTGATCTGAAAACCTATGGAAGCTATGTGGACCTATCATCAGCCCTGGAGAAAATGTTCAGCAGCTTCACAATCGGTCATTGTGGCTCCAACGGAGTTCCAAACCAGGATGCGTTAAATGAGAAGCGATTGATGGATCTGCTCCATGGCTCTGAATATGTACTCACCTATGAAGATAAAGATGGCGATTGGATGCTTGTTGGTGATGTTCCATGGGAGATGTTCACTGAATCTTGCACAAGGATGAGGATCATGAAGAGTTCAGAGGCTATTGGGTTAGGTATGCTATGCTATGAACTTTATTAA 894 48.21 MSIPLEHDYIGLTEESVPSQEGSEKSNDRRNNAGLNLKATELRLGLPGLESPVRDDGLEDNNGYPLKSSVSGAKRGFSVAIDRASARWVLPASAGSEADSIKNGGLFSPRGVIENGTKPPVSAVCGAKEGVSPSAKPPLSAPAAKAQVVGWPPIRSFRKNSMATQPPKSTDDADDKLGSGCIYVKVSMDGAPYLRKVDLKTYGSYVDLSSALEKMFSSFTIGHCGSNGVPNQDALNEKRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLGMLCYELY 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5922688 5926979 - Sed0019437.2 Sed08g0776 722552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0776 297 MobiDBLite consensus disorder prediction 1 69 - -
Sed08g0776 297 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 36 287 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Sed08g0776 297 Pfam AUX/IAA family 39 290 IPR033389 -
Sed08g0776 297 Gene3D - 176 294 - -
Sed08g0776 297 SUPERFAMILY CAD & PB1 domains 179 282 - -
Sed08g0776 297 ProSiteProfiles PB1 domain profile. 181 283 IPR053793 -
Sed08g0776 297 FunFam Auxin-responsive protein 176 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0776 K14484 - - csv:101215632 491.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0776 Sed-Chr8:5922688 Sed12g1842 Sed-Chr12:29674329 4.10E-139 dispersed
Sed08g0775 Sed-Chr8:5922688 Sed08g0776 Sed-Chr8:5922688 2.60E-165 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g329 . . . . . . . Bma13g00853 . Cmo17g00756 . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0703 Cone2ag0326 Lsi02g02812 Csa07g02259 . Cme01g02713 . Blo10g00599 . . . Bpe09g00317 . . Sed08g0776 . . . Cma17g00789 . Car17g00729 . . Bhi09g00171 Tan06g0276 Cmetu02g1119 . Hepe03g1533 . . Cla09g00170 Cam09g0186 Cec09g0191 Cco09g0184 Clacu09g0188 . Cre09g0174 . . Chy01g02086 .
Vvi18g464 . . . . . . . . Cmo05g00546 . . . . . Sed08g0776 . . Bhi04g00794 Tan06g0276 Cmetu02g1119 . Hepe10g0465 . Lcy13g1529 Cla08g01136 Cam08g1594 Cec08g1164 Cco08g1291 Clacu08g1294 . Cre08g1076 Cone6ag1543 . Cone8ag0208 . . . . Cme03g01836 Blo17g00108 . . . . . . . . . . . Cma05g00517 Car05g00469 . Cpe11g00458 . . . . . . . . . . . . . . . Lsi08g00993 Csa02g02178 Chy03g01339 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001264 3 2 3 2 3 2 4 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 3 2 7 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39306 PF02309 AUX_IAA 3.60E-83 CL0072 Sed TR