Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0779 ATGGAAGATTCCGGCAATAATACAACTCCTAAGGACTTTGTATGTCCAATCACTTGCAACATTTTTTATGATCCAGTAACTATAGAAACAGGTCAAACTTATGAGAGAAATGCAATTCAAGAATGGCTTGATAGAGGGAATTCAACCTGCCCAATAACTGGACAGAAGCTGCAAAATACCCAACTTCCCAAAACCAATTATGTCCTCAAAAGGCTCATTGCAAGTTGGCTTGAGGAAAATCCCACTTTTGTATCAGAAAAACCATTTGGTTTGACTTCACCTGTTAATGTCATAAACAGAACCATGGAGGTGAGGCAAGCAATTACCAATCTCTATTTATCTGAAGTTCTTGATGATGCAGAAGCTGCTGTGCTTTGTGTAGAGAGGTTTTGGTTGGAAGAGAATGTTGAAATGAAGATTCAGTATATGTTATTGAAGCCTCCTGTAATTAATGGACTTGTTGAGATTCTTGTCAATTCTGTCAATCTCCATGTTTTGAGAGCCTCAATCTTTCTCCTATCCGAGTTGGGATTCAAGGATGCTGCTGTCATTCAAATGCTTACGCGGGTCGAGTCCGATGTGGACTGTATTTTGACACTTTTCAAAAGTGGTTTGATGGAGGCTGTTGTGTTGATATATCAGTTTGGACTTTCGGTCCAGCATCTGCAAGAGATGGACCTTGCCGGGTTTCTTTTGAATGTTGTTAAGAAGAAAGGAGATGATGTGAATGATAAGATGCGGTTGAGCCAAAAATCTGCTGCAGTGATTTTACTTAGAAAGATTTTGGGAAGGAGTAAAGAAGGGTCTTTGATTGCTGTTGCTGTGCTTGCTGAAAATGCAATTGACAGTATTTTGGGTAGTTTAAAAGCCAAACAGGTAGAGGAGAGGATTGCTGCAGTTGGGATCTTGCTAAGATGCATTCAAGAAGATGGGAAGTGTAGAAATATCATAGCTGATGAAGCTCATGCTCACTTAGCTTCAATTTTGGGAAGTTTCATGGAAGTGAGTAATGAAGAACAATTCGAGATCGTTATGTTTCTCTCCGATTTAGTTAAGTTAAACAGGAGAACTTTCAACCAACAAATTCTTCAAAGCATAAGGGATGGAGGTGGATGTAGTACCATGCACTCTCTTTTGATATATTTACAGACTGCCCATAAAGATCAATCTCCTGTAGTGGCTGGTCTTTTGCTGCAACTTGATATCTTGGTTGAACCACGAAAGATGAGTATCTATCGTGAAGAGGCAATGGATGTTCTTTTTTCATGTCTTGGCGATTCTGACTTTCCAACCGCACAAATTTCAGCAGCTGAGACGATTATGTCTTTACAAGGGAGGTTTAGTACATCTGGAAGACCCTTAGCTAGGTATGTTCTTCTTGAGCGCGTTGGATTTATGATAGGTCGTATGAAACTCAAACCAAGAGGAAATAATAGCAATGCTCCTGGACAAGTTAAACTTACAACAGAAGAAGAGAGGGCAAATGATGAATGGGAAAGAAAGATGGCATTTGTACTTATGAGCCATGACTTTGGCTTGGTGTTTGAACCATTGGCAAAAGGCTTAAAGAGCAAATATGCAGCATTATTTTCAGCATGCTTTGTCTTGGCCACATGGCTTTGTCATATGCTCCGAGTTCTTCCCGACACGGGGATTCTAGAAGCTGCTCGGGTTTGCTTGCTTGACCACTTCATATCGATTTTCACAACAACAACAGATATTGAAGAGAAGGCGCTTGGCTTGTTAGCAATGAACAGTTTCGTACACGAACCAGAAGGAATGCAATGCCTACGTTCCAACATGAAAAGTATCAATAGTGGTCTCAAAGAACTTAGGAGATCAACACCATTGGCCTTTGAAATGCTGAAAGTTCTATGTGAGGGAGAAGAGTCGAGTACGGAACTATGGAATCATCAAGAGTTGTTTCAAGTAGATTGCAGTAAAAATGGAGAAGTGCTATCAATTGTTTATTTCAAAGACAAAACCATCTCTGGCCATTCAGATGGAACAATCAAGGTCTGGTCTGTTAGAGGAACTAATATTCATCTCCTACAAGAAACTCAAGAGCACTCTAAGGGAGTCACCAGTCTAGCAATTACAGAATCTGATGACAAACTATACAGTGGCTCTTTAGACAAGACCATTAAGGTATGGTCTTTAGACAGTGATAAAATCCAATGTATACAAGTCCATGACGTGAAGGATCAAATTCATAATTTAGTCGTTTCAAAAACCGTTGCGTGCTTTGTTCCGCATGGAGCTGGTATTAGGGTTTATTCTTGGGGTGGGGAATCAAAGTTACTAAACTCAAGCAAACATGTCAAGTGTTTGGATCTTGTGCATGGAAAACTATATTGTGGATGCCATGATGGTAGCATCCAGGAGGTCGATTTGGCTACGGAAACCTTAAGTAACATACACAGTGGTTCTAGAAAACTATTGGGAAAGGCTCCTTCAGTTCAGGCACTTCAAATTTACGACGAACAATTGTTTTCGGCTTGCACTACTTTAGATGGATCAGCTGTGAAGATTTGGAATACTTCAAACAACAATGTGATTGCATCATTGTCAACTCCAATGGATGTAAGAAGCATGATTGTTAGCTCAGATCTAATTTATGTAGGAACCAGAGGAGTGGTTGAAATGTGGAGCAGGGAAAAATACAACAAAATAGACACACTTCAAACTGGTAGAAACTGTAAGGTTGCTTGTATGGCTCTCAGTGAAAGGGAGGATGTTCTTGTCATTGGAACATCTGATGGTCGGATTCAGGCTTGGGGACTGTGA 2787 40.22 MEDSGNNTTPKDFVCPITCNIFYDPVTIETGQTYERNAIQEWLDRGNSTCPITGQKLQNTQLPKTNYVLKRLIASWLEENPTFVSEKPFGLTSPVNVINRTMEVRQAITNLYLSEVLDDAEAAVLCVERFWLEENVEMKIQYMLLKPPVINGLVEILVNSVNLHVLRASIFLLSELGFKDAAVIQMLTRVESDVDCILTLFKSGLMEAVVLIYQFGLSVQHLQEMDLAGFLLNVVKKKGDDVNDKMRLSQKSAAVILLRKILGRSKEGSLIAVAVLAENAIDSILGSLKAKQVEERIAAVGILLRCIQEDGKCRNIIADEAHAHLASILGSFMEVSNEEQFEIVMFLSDLVKLNRRTFNQQILQSIRDGGGCSTMHSLLIYLQTAHKDQSPVVAGLLLQLDILVEPRKMSIYREEAMDVLFSCLGDSDFPTAQISAAETIMSLQGRFSTSGRPLARYVLLERVGFMIGRMKLKPRGNNSNAPGQVKLTTEEERANDEWERKMAFVLMSHDFGLVFEPLAKGLKSKYAALFSACFVLATWLCHMLRVLPDTGILEAARVCLLDHFISIFTTTTDIEEKALGLLAMNSFVHEPEGMQCLRSNMKSINSGLKELRRSTPLAFEMLKVLCEGEESSTELWNHQELFQVDCSKNGEVLSIVYFKDKTISGHSDGTIKVWSVRGTNIHLLQETQEHSKGVTSLAITESDDKLYSGSLDKTIKVWSLDSDKIQCIQVHDVKDQIHNLVVSKTVACFVPHGAGIRVYSWGGESKLLNSSKHVKCLDLVHGKLYCGCHDGSIQEVDLATETLSNIHSGSRKLLGKAPSVQALQIYDEQLFSACTTLDGSAVKIWNTSNNNVIASLSTPMDVRSMIVSSDLIYVGTRGVVEMWSREKYNKIDTLQTGRNCKVACMALSEREDVLVIGTSDGRIQAWGL 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6004469 6014483 + Sed0019774.1 Sed08g0779 722555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0779 928 SUPERFAMILY ARM repeat 253 589 IPR016024 -
Sed08g0779 928 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Sed08g0779 928 Gene3D - 240 457 IPR011989 -
Sed08g0779 928 Pfam U-box domain 10 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed08g0779 928 SUPERFAMILY RING/U-box 8 83 - -
Sed08g0779 928 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 722 - -
Sed08g0779 928 SUPERFAMILY WD40 repeat-like 663 927 IPR036322 GO:0005515(InterPro)
Sed08g0779 928 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 895 928 - -
Sed08g0779 928 ProSiteProfiles Trp-Asp (WD) repeats profile. 895 928 IPR001680 GO:0005515(InterPro)
Sed08g0779 928 CDD RING-Ubox_PUB 10 62 IPR045210 -
Sed08g0779 928 Gene3D - 743 928 IPR015943 GO:0005515(InterPro)
Sed08g0779 928 Pfam WD domain, G-beta repeat 684 719 IPR001680 GO:0005515(InterPro)
Sed08g0779 928 Gene3D - 624 726 IPR015943 GO:0005515(InterPro)
Sed08g0779 928 SMART WD40_4 764 797 IPR001680 GO:0005515(InterPro)
Sed08g0779 928 SMART WD40_4 680 719 IPR001680 GO:0005515(InterPro)
Sed08g0779 928 SMART WD40_4 810 846 IPR001680 GO:0005515(InterPro)
Sed08g0779 928 SMART WD40_4 637 675 IPR001680 GO:0005515(InterPro)
Sed08g0779 928 SMART WD40_4 887 927 IPR001680 GO:0005515(InterPro)
Sed08g0779 928 SMART WD40_4 849 884 IPR001680 GO:0005515(InterPro)
Sed08g0779 928 SMART Ubox_2 12 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed08g0779 928 ProSiteProfiles U-box domain profile. 8 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed08g0779 928 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 88 IPR052858 -
Sed08g0779 928 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 722 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0779 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0779 Sed-Chr8:6004469 Sed12g1845 Sed-Chr12:29712981 0.00E+00 dispersed
Sed12g1844 Sed-Chr12:29710451 Sed08g0779 Sed-Chr8:6004469 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008106 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 2 1 35