Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0784 ATGGGGGAAGTAGAGAACCGAGAGATGGAGGATTTGTCCCCGCCAAATGCTGAAACTGATACCGCGGTTTCTTCTGATGTTCCTGCGAAGAAGCTAGCTCGGCAGCTGGATTTTACGGGGCTGGGCGGTGCTGTCTTGCCGGGGAACCCTCATTTTCAGGCTCAGTCACCGGCCGTGGTGGTGGCGCAGAATCCGTCGCGACATTTGGTGGCTTTGCCCATCGGAACGCAATCGCCTCATCCGCTCAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTGTTGAAACAAAAGATGCGACTCCAAAGAAACAAAAGCAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTATACTGTGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGTTCAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCGAAAATTGCTAGCAGCCCACATGGAACACGGGAAAGCAGGGATGAGATTGGAGAGCTCGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGCTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGTGTCGACTGTAAGAATTTTGAAGGAAGTGAAGAAAGACAAGCTCTTTTCCATGGCAACCATGCCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCGTGCCTTCCCACTTCAAAGAAAAGAAAAAGCCCAGAGCTTTGCTTTGGCCCTTCAGGGAAGGATCCCCCCCTCAACAGCGTAGCTCAATTTCATCAGACGAATAATATACTGTCTACTGGCACATCTACATCATCTCCCCTCCCTGTTGCTCATGTTGGCAGCCCTGCAGCTCCAGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTGGCAGACCTTATCCAGCCGAATGACTTGAAGGAACTTTGCTCAGTTTTAGTGGTGTTGGCAAGTGAAGCTGCCAAGAATTTAGAAGATCACAGAATAGCTGAGAAGCAGATAAATGATCCACTACAAACTTCCCGTGCTTCATCAACTGGAGATAGGTCACAGCATCAGACGGCAGATGAGAAAGCTGCAGATAGTGAGCGTGGAAGTTTAAACCAACGTGATGGAATTGTACATGACAATTCCGATGGTTCGGACACAACAAGGGCAAGGTCAATGTCCCCTGGAACTTTAGCTTTGATGTGCGATGAACGAGATACAATGTTCATGGGAGCTGCTCCAGCCAATGGGTCAACCGGCCATGGTTGCAGCACATCACATGTGCCTGATAATTCTGTGTCAGAAGTCTACGTTGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAGATAAAAGAAACAAAATTGACTAAAAGCGAAGTTAGGAACGAAAATCACAGCAACAATTTCACCTCAAATGGTGGATGCCAACAGAGAAGCACCAGCAACGGGGTCGGGGTCGTGAAAAATGTGGCTCTCTCCACACCTAGATTATCGCCAGGTACCGCAGCTCGTGTTCCTAGTAATGATCCACCCCCCAAAATCCTACCCCTTCCTGAAAATGGAAAGAGTAAACCATAG 1710 46.78 MGEVENREMEDLSPPNAETDTAVSSDVPAKKLARQLDFTGLGGAVLPGNPHFQAQSPAVVVAQNPSRHLVALPIGTQSPHPLRKPDSPKSRSRSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCSNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGELVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCVDCKNFEGSEERQALFHGNHANNMAYIQQAANAAITGAIGSSGYACLPTSKKRKSPELCFGPSGKDPPLNSVAQFHQTNNILSTGTSTSSPLPVAHVGSPAAPGPSKFSFRSLLADLIQPNDLKELCSVLVVLASEAAKNLEDHRIAEKQINDPLQTSRASSTGDRSQHQTADEKAADSERGSLNQRDGIVHDNSDGSDTTRARSMSPGTLALMCDERDTMFMGAAPANGSTGHGCSTSHVPDNSVSEVYVEQERIVLTKFRDCLNKLITLGEIKETKLTKSEVRNENHSNNFTSNGGCQQRSTSNGVGVVKNVALSTPRLSPGTAARVPSNDPPPKILPLPENGKSKP 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6039014 6045360 + Sed0009271.1 Sed08g0784 722560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0784 569 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 191 225 IPR005172 -
Sed08g0784 569 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 105 140 IPR005172 -
Sed08g0784 569 MobiDBLite consensus disorder prediction 506 532 - -
Sed08g0784 569 SMART CXC_2 103 143 IPR033467 -
Sed08g0784 569 SMART CXC_2 188 229 IPR033467 -
Sed08g0784 569 MobiDBLite consensus disorder prediction 388 419 - -
Sed08g0784 569 ProSiteProfiles CRC domain profile. 104 228 IPR005172 -
Sed08g0784 569 MobiDBLite consensus disorder prediction 502 569 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 371 387 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 302 321 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 368 430 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 72 103 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 1 28 - -
Sed08g0784 569 PANTHER TESMIN/TSO1-RELATED 44 498 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Sed08g0784 569 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0784 Sed-Chr8:6039014 Sed11g0046 Sed-Chr11:431062 2.10E-139 dispersed
Sed11g0045 Sed-Chr11:431062 Sed08g0784 Sed-Chr8:6039014 1.20E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39307 PF03638 TCR 2.00E-12 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0784 - - - 0.0