Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0784 ATGGGGGAAGTAGAGAACCGAGAGATGGAGGATTTGTCCCCGCCAAATGCTGAAACTGATACCGCGGTTTCTTCTGATGTTCCTGCGAAGAAGCTAGCTCGGCAGCTGGATTTTACGGGGCTGGGCGGTGCTGTCTTGCCGGGGAACCCTCATTTTCAGGCTCAGTCACCGGCCGTGGTGGTGGCGCAGAATCCGTCGCGACATTTGGTGGCTTTGCCCATCGGAACGCAATCGCCTCATCCGCTCAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTGTTGAAACAAAAGATGCGACTCCAAAGAAACAAAAGCAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTATACTGTGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGTTCAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCGAAAATTGCTAGCAGCCCACATGGAACACGGGAAAGCAGGGATGAGATTGGAGAGCTCGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGCTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGTGTCGACTGTAAGAATTTTGAAGGAAGTGAAGAAAGACAAGCTCTTTTCCATGGCAACCATGCCAACAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCGTGCCTTCCCACTTCAAAGAAAAGAAAAAGCCCAGAGCTTTGCTTTGGCCCTTCAGGGAAGGATCCCCCCCTCAACAGCGTAGCTCAATTTCATCAGACGAATAATATACTGTCTACTGGCACATCTACATCATCTCCCCTCCCTGTTGCTCATGTTGGCAGCCCTGCAGCTCCAGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTGGCAGACCTTATCCAGCCGAATGACTTGAAGGAACTTTGCTCAGTTTTAGTGGTGTTGGCAAGTGAAGCTGCCAAGAATTTAGAAGATCACAGAATAGCTGAGAAGCAGATAAATGATCCACTACAAACTTCCCGTGCTTCATCAACTGGAGATAGGTCACAGCATCAGACGGCAGATGAGAAAGCTGCAGATAGTGAGCGTGGAAGTTTAAACCAACGTGATGGAATTGTACATGACAATTCCGATGGTTCGGACACAACAAGGGCAAGGTCAATGTCCCCTGGAACTTTAGCTTTGATGTGCGATGAACGAGATACAATGTTCATGGGAGCTGCTCCAGCCAATGGGTCAACCGGCCATGGTTGCAGCACATCACATGTGCCTGATAATTCTGTGTCAGAAGTCTACGTTGAGCAGGAACGGATTGTTTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAGATAAAAGAAACAAAATTGACTAAAAGCGAAGTTAGGAACGAAAATCACAGCAACAATTTCACCTCAAATGGTGGATGCCAACAGAGAAGCACCAGCAACGGGGTCGGGGTCGTGAAAAATGTGGCTCTCTCCACACCTAGATTATCGCCAGGTACCGCAGCTCGTGTTCCTAGTAATGATCCACCCCCCAAAATCCTACCCCTTCCTGAAAATGGAAAGAGTAAACCATAG 1710 46.78 MGEVENREMEDLSPPNAETDTAVSSDVPAKKLARQLDFTGLGGAVLPGNPHFQAQSPAVVVAQNPSRHLVALPIGTQSPHPLRKPDSPKSRSRSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCSNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGELVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCVDCKNFEGSEERQALFHGNHANNMAYIQQAANAAITGAIGSSGYACLPTSKKRKSPELCFGPSGKDPPLNSVAQFHQTNNILSTGTSTSSPLPVAHVGSPAAPGPSKFSFRSLLADLIQPNDLKELCSVLVVLASEAAKNLEDHRIAEKQINDPLQTSRASSTGDRSQHQTADEKAADSERGSLNQRDGIVHDNSDGSDTTRARSMSPGTLALMCDERDTMFMGAAPANGSTGHGCSTSHVPDNSVSEVYVEQERIVLTKFRDCLNKLITLGEIKETKLTKSEVRNENHSNNFTSNGGCQQRSTSNGVGVVKNVALSTPRLSPGTAARVPSNDPPPKILPLPENGKSKP 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6039014 6045360 + Sed0009271.1 Sed08g0784 722560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0784 569 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 191 225 IPR005172 -
Sed08g0784 569 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 105 140 IPR005172 -
Sed08g0784 569 MobiDBLite consensus disorder prediction 506 532 - -
Sed08g0784 569 SMART CXC_2 103 143 IPR033467 -
Sed08g0784 569 SMART CXC_2 188 229 IPR033467 -
Sed08g0784 569 MobiDBLite consensus disorder prediction 388 419 - -
Sed08g0784 569 ProSiteProfiles CRC domain profile. 104 228 IPR005172 -
Sed08g0784 569 MobiDBLite consensus disorder prediction 502 569 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 371 387 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 302 321 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 368 430 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 72 103 - -
Sed08g0784 569 MobiDBLite consensus disorder prediction 1 28 - -
Sed08g0784 569 PANTHER TESMIN/TSO1-RELATED 44 498 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Sed08g0784 569 MobiDBLite consensus disorder prediction 84 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0784 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0784 Sed-Chr8:6039014 Sed11g0046 Sed-Chr11:431062 2.10E-139 dispersed
Sed11g0045 Sed-Chr11:431062 Sed08g0784 Sed-Chr8:6039014 1.20E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0956 . 306 620 CPP Transcription Factor Family AT3G22760 53.6 3.5e-87 320.1
Sed12g0955 . 306 593 CPP Transcription Factor Family AT3G22760 51.0 1.6e-71 268.1
Sed11g0045 . 31 515 CPP Transcription Factor Family AT2G20110 56.5 1.6e-141 500.7
Sed08g0784 . 29 504 CPP Transcription Factor Family AT2G20110 53.6 7.9e-128 455.3
Sed11g0046 . 31 395 CPP Transcription Factor Family AT2G20110 58.0 7.2e-113 405.6
Sed11g0046 . 105 379 CPP Transcription Factor Family AT5G25790 50.9 5.0e-75 279.6
Sed11g0045 . 29 522 CPP Transcription Factor Family AT4G29000 57.2 2.1e-153 540.4
Sed08g0784 . 23 527 CPP Transcription Factor Family AT4G29000 53.8 6.9e-141 498.8
Sed11g0046 . 29 417 CPP Transcription Factor Family AT4G29000 55.8 8.8e-120 428.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39307 PF03638 TCR 2.00E-12 No_clan Sed TF