Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0804 | ATGGCTCAGCTTTTCCAAAACGAGCCTATAATCTTCAACTCGCCGTCGCCGTCGTCATCGTCGGCGGTGTCGGTCGACTCGAACCGGAAACGGGCGAAACGGCCGAGGGAAAACAGCAATAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCGTGGGGCAAATGGGTTTCCGAAATCCGCGAACCGCGAAAAAAAAGCCGGATCTGGCTTGGCACGTTCACCACCGCGGAAATGGCTGCACGTGCCCACGACGTGGCCGCGTTAACCATCAAGGGCAATTCCGCCATTCTCAACTTCCCCGAACTCGCCGATCAATTCCCCCGCCCCGCCTCCTCCTCGCCACGTGACGTCCAAGCCGCCGCTGCCAAAGCCGCCTCCATGGAAATCCCCACCCCTCCCCCGCCGCCTCCCCAGCCGCGCTCGCCGTCGCCGTCGTCATCATCTCCCTCTTCCTCCTCCTCCTCCTCCTCCTCATTATGCCCGTCGACTCCCGAGGAATTGAGCGAAATCGTTGAACTGCCGAGTTTGGGGACGAGTTATGAAACGGCCGAGTCAGGGAACGAGTTCGTATTCGTTGACTCGGTCGAAGGCTGGCTTTATTCTTACCCGTGGTTTCACAGAGTGAGTAATGTGGACCAACAAGAACAAGATTATGGGTTCTTTAAAGACCCGATTTCAATGCCCGATTATTCCACAAACTTCGAATCTTTCTTGTGGCAACATTAA | 732 | 56.69 | MAQLFQNEPIIFNSPSPSSSSAVSVDSNRKRAKRPRENSNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFTTAEMAARAHDVAALTIKGNSAILNFPELADQFPRPASSSPRDVQAAAAKAASMEIPTPPPPPPQPRSPSPSSSSPSSSSSSSSSLCPSTPEELSEIVELPSLGTSYETAESGNEFVFVDSVEGWLYSYPWFHRVSNVDQQEQDYGFFKDPISMPDYSTNFESFLWQH | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6325078 | 6326177 | - | Sed0003711.1 | Sed08g0804 | 722580 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0804 | 243 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Sed08g0804 | 243 | MobiDBLite | consensus disorder prediction | 27 | 43 | - | - | |
Sed08g0804 | 243 | PRINTS | Ethylene responsive element binding protein signature | 46 | 57 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed08g0804 | 243 | PRINTS | Ethylene responsive element binding protein signature | 68 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed08g0804 | 243 | CDD | AP2 | 46 | 104 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed08g0804 | 243 | SMART | rav1_2 | 45 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed08g0804 | 243 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Sed08g0804 | 243 | Gene3D | AP2/ERF domain | 45 | 103 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed08g0804 | 243 | MobiDBLite | consensus disorder prediction | 109 | 169 | - | - | |
Sed08g0804 | 243 | MobiDBLite | consensus disorder prediction | 130 | 146 | - | - | |
Sed08g0804 | 243 | MobiDBLite | consensus disorder prediction | 147 | 166 | - | - | |
Sed08g0804 | 243 | ProSiteProfiles | AP2/ERF domain profile. | 45 | 102 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed08g0804 | 243 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 31 | 195 | IPR051032 | - | |
Sed08g0804 | 243 | Pfam | AP2 domain | 44 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed08g0804 | 243 | FunFam | Ethylene-responsive transcription factor 2 | 44 | 103 | - | - | |
Sed08g0804 | 243 | SUPERFAMILY | DNA-binding domain | 45 | 103 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0804 | Sed-Chr8:6325078 | Sed11g0054 | Sed-Chr11:512499 | 2.90E-50 | dispersed | |
Sed12g1829 | Sed-Chr12:29557891 | Sed08g0804 | Sed-Chr8:6325078 | 1.00E-62 | wgd | |
Sed03g1737 | Sed-Chr3:11366227 | Sed08g0804 | Sed-Chr8:6325078 | 3.20E-37 | wgd | |
Sed06g2173 | Sed-Chr6:45482245 | Sed08g0804 | Sed-Chr8:6325078 | 1.40E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39309 | PF00847 | AP2 | 6.70E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0804 | K09286 | - | csv:101219745 | 313.538 |