Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0804 ATGGCTCAGCTTTTCCAAAACGAGCCTATAATCTTCAACTCGCCGTCGCCGTCGTCATCGTCGGCGGTGTCGGTCGACTCGAACCGGAAACGGGCGAAACGGCCGAGGGAAAACAGCAATAGCAAGCACCCGGTTTTCCGTGGGGTCCGAATGAGGGCGTGGGGCAAATGGGTTTCCGAAATCCGCGAACCGCGAAAAAAAAGCCGGATCTGGCTTGGCACGTTCACCACCGCGGAAATGGCTGCACGTGCCCACGACGTGGCCGCGTTAACCATCAAGGGCAATTCCGCCATTCTCAACTTCCCCGAACTCGCCGATCAATTCCCCCGCCCCGCCTCCTCCTCGCCACGTGACGTCCAAGCCGCCGCTGCCAAAGCCGCCTCCATGGAAATCCCCACCCCTCCCCCGCCGCCTCCCCAGCCGCGCTCGCCGTCGCCGTCGTCATCATCTCCCTCTTCCTCCTCCTCCTCCTCCTCCTCATTATGCCCGTCGACTCCCGAGGAATTGAGCGAAATCGTTGAACTGCCGAGTTTGGGGACGAGTTATGAAACGGCCGAGTCAGGGAACGAGTTCGTATTCGTTGACTCGGTCGAAGGCTGGCTTTATTCTTACCCGTGGTTTCACAGAGTGAGTAATGTGGACCAACAAGAACAAGATTATGGGTTCTTTAAAGACCCGATTTCAATGCCCGATTATTCCACAAACTTCGAATCTTTCTTGTGGCAACATTAA 732 56.69 MAQLFQNEPIIFNSPSPSSSSAVSVDSNRKRAKRPRENSNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFTTAEMAARAHDVAALTIKGNSAILNFPELADQFPRPASSSPRDVQAAAAKAASMEIPTPPPPPPQPRSPSPSSSSPSSSSSSSSSLCPSTPEELSEIVELPSLGTSYETAESGNEFVFVDSVEGWLYSYPWFHRVSNVDQQEQDYGFFKDPISMPDYSTNFESFLWQH 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6325078 6326177 - Sed0003711.1 Sed08g0804 722580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0804 243 MobiDBLite consensus disorder prediction 1 26 - -
Sed08g0804 243 MobiDBLite consensus disorder prediction 27 43 - -
Sed08g0804 243 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0804 243 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0804 243 CDD AP2 46 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0804 243 SMART rav1_2 45 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0804 243 MobiDBLite consensus disorder prediction 1 44 - -
Sed08g0804 243 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0804 243 MobiDBLite consensus disorder prediction 109 169 - -
Sed08g0804 243 MobiDBLite consensus disorder prediction 130 146 - -
Sed08g0804 243 MobiDBLite consensus disorder prediction 147 166 - -
Sed08g0804 243 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0804 243 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 195 IPR051032 -
Sed08g0804 243 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed08g0804 243 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Sed08g0804 243 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0804 Sed-Chr8:6325078 Sed11g0054 Sed-Chr11:512499 2.90E-50 dispersed
Sed12g1829 Sed-Chr12:29557891 Sed08g0804 Sed-Chr8:6325078 1.00E-62 wgd
Sed03g1737 Sed-Chr3:11366227 Sed08g0804 Sed-Chr8:6325078 3.20E-37 wgd
Sed06g2173 Sed-Chr6:45482245 Sed08g0804 Sed-Chr8:6325078 1.40E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39309 PF00847 AP2 6.70E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0804 K09286 - csv:101219745 313.538