Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0818 ATGGGGAGAGCAACAAGATGGCTGAAGAATCTCTTTGGGATTAAAAAAGAAAGAGAACCCACAGGAAAAAACCCCAACTCCGGCGTCAAAAACGACAAAAATCCCACTTCTCATTTCGCCGGCGACGCCCAGATCTGCAACAATCCGGCCACAATTCCGCCCAATTTATCCGCGGCGGAGGCCGCATGGCTGAAATCCTTCTACTCAGAAACAGAGAACGAACAGAGCAAGCACGCCAGAGCCGTGGCCGCAGCCACCGCCGCCGCCGCCGACGCGGCCGTCGCTGCCGCACAAGCCGCCGTGGCGGTGGTCCGCCTCACCAGCCACGGCAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCGCCGTCAAGATTCAAACTTTCTTCAGAGGGTTTCTTGCGAGGAAAGCCCTCAGAGCTTTAAAAGGATTGGTGAAATTACAAGCCCTTGTGAGAGGGTATTTAATCCGTAAACAAGCAGCTGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGAAAATCAACGGAGAAATTCGACGAAACGAAAAGCGAGCACACATGTTCAGTACACAGCCGAAGACTCTCAGCTTCATTCGAAGAAAGCCCCAAAATCGTCGAAATGGACACCGGCCGGCCAAAATCCTGGTCTCGCCGGACGAACATGTCGGCGTCGGATTTCGTGGACGGCCCATTTCCCCAATTGAAGATTCCCGATTGCCGGAATTTCCAAGATTCGGACTGGGGACTCGCCGGAGACGAGTATCGGATGATTTCGACGGCGCAGAGCACTCCTCGATTCGTGAGCTCCGGCGGATTGAACGGCCCTCCAACGCCGGCGAAGAGCATGTGTGCGGATAATTTCTTCAGGGGGCATTTGAATTTTCCGAATTACATGGCGAATACGCAATCGTTCAAGGCGAAATTGAGATCTCATAGCGCGCCGAAACAGAGGCCGGAGCCGGGATCGAAGAAGAGGGTTTCGCTGAACGAATTGATGGAATCGAGAAGCAGTTTAAGTGGGGTTAGAATGCAGAGATCTTGTTCGCATGTTCAAGAAGCCATTAATTTCAAGAATGCTGTGATGAGTAAACTGGATCGGCCGATATCGGAATTCAATAACTTGCAGAGGAGATTGTGA 1176 52.47 MGRATRWLKNLFGIKKEREPTGKNPNSGVKNDKNPTSHFAGDAQICNNPATIPPNLSAAEAAWLKSFYSETENEQSKHARAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWAAVKIQTFFRGFLARKALRALKGLVKLQALVRGYLIRKQAAATLHSMQALIRAQATVRSQRTRKSTEKFDETKSEHTCSVHSRRLSASFEESPKIVEMDTGRPKSWSRRTNMSASDFVDGPFPQLKIPDCRNFQDSDWGLAGDEYRMISTAQSTPRFVSSGGLNGPPTPAKSMCADNFFRGHLNFPNYMANTQSFKAKLRSHSAPKQRPEPGSKKRVSLNELMESRSSLSGVRMQRSCSHVQEAINFKNAVMSKLDRPISEFNNLQRRL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6625789 6627452 + Sed0018059.1 Sed08g0818 722594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0818 391 Gene3D - 102 146 - -
Sed08g0818 391 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Sed08g0818 391 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Sed08g0818 391 ProSiteProfiles IQ motif profile. 120 148 - -
Sed08g0818 391 PANTHER IQ-DOMAIN 5-RELATED 6 348 - -
Sed08g0818 391 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Sed08g0818 391 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Sed08g0818 391 ProSiteProfiles IQ motif profile. 144 171 - -
Sed08g0818 391 Pfam Protein of unknown function (DUF4005) 286 352 IPR025064 -
Sed08g0818 391 MobiDBLite consensus disorder prediction 10 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0818 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1415 Sed-Chr7:10848107 Sed08g0818 Sed-Chr8:6625789 1.80E-76 dispersed
Sed08g0818 Sed-Chr8:6625789 Sed09g1621 Sed-Chr9:39659527 1.80E-78 dispersed
Sed12g1812 Sed-Chr12:29224881 Sed08g0818 Sed-Chr8:6625789 3.80E-137 wgd
Sed06g2181 Sed-Chr6:45593304 Sed08g0818 Sed-Chr8:6625789 1.70E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g260 . . . . Bpe01g00561 . . Bma11g00541 Cmo10g00702 Cmo11g00664 . . . . Sed08g0818 Cpe04g01092 Cpe18g00396 Bhi02g01952 Tan09g1205 Cmetu04g0490 . Hepe09g0820 . . . . . . . . . . Cone16ag0724 . Cone7ag0718 Lsi06g00223 . . Cme02g00188 Blo08g00322 Blo14g00521 . . Bpe08g00502 . . . . . . Cma10g00673 Cma11g00652 Car10g00607 Car11g00535 . . . . . . . . . Cla03g01545 Cam03g1624 Cec03g1666 Cco03g1666 Clacu03g1648 Cmu03g2201 Cre03g1876 . Csa01g02871 Chy02g01166 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2817 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed01g2818 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed03g0040 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0042 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0041 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed03g0043 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed07g2286 . 84 258 IQD Protein Family AT2G26410 50.6 1.9e-38 158.3
Sed08g1171 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed08g1170 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed12g1498 . 1 398 IQD Protein Family AT3G22190 56.3 4.7e-88 322.8
Sed13g1870 . 1 437 IQD Protein Family AT2G26180 61.0 3.3e-118 422.9
Sed13g1871 . 11 425 IQD Protein Family AT2G26180 61.4 1.1e-110 397.9
Sed11g1830 . 1 435 IQD Protein Family AT2G26180 55.2 7.0e-100 362.1
Sed10g0264 . 1 271 IQD Protein Family AT2G33990 52.3 3.5e-65 246.1
Sed14g1502 . 1 281 IQD Protein Family AT2G33990 51.2 1.5e-63 240.7
Sed14g1502 . 1 237 IQD Protein Family AT3G15050 52.3 1.4e-58 224.2
Sed04g1560 . 43 216 IQD Protein Family AT3G15050 62.7 8.0e-54 208.4
Sed09g0603 . 1 499 IQD Protein Family AT4G00820 51.5 9.8e-115 411.8
Sed09g0603 . 1 499 IQD Protein Family AT1G01110 50.5 7.7e-112 402.1
Sed09g1621 . 1 396 IQD Protein Family AT3G16490 52.7 9.5e-75 278.5
Sed07g1415 . 1 393 IQD Protein Family AT3G16490 51.4 1.0e-68 258.5
Sed08g0818 . 1 356 IQD Protein Family AT3G16490 52.6 6.8e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37