Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0818 ATGGGGAGAGCAACAAGATGGCTGAAGAATCTCTTTGGGATTAAAAAAGAAAGAGAACCCACAGGAAAAAACCCCAACTCCGGCGTCAAAAACGACAAAAATCCCACTTCTCATTTCGCCGGCGACGCCCAGATCTGCAACAATCCGGCCACAATTCCGCCCAATTTATCCGCGGCGGAGGCCGCATGGCTGAAATCCTTCTACTCAGAAACAGAGAACGAACAGAGCAAGCACGCCAGAGCCGTGGCCGCAGCCACCGCCGCCGCCGCCGACGCGGCCGTCGCTGCCGCACAAGCCGCCGTGGCGGTGGTCCGCCTCACCAGCCACGGCAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCGCCGTCAAGATTCAAACTTTCTTCAGAGGGTTTCTTGCGAGGAAAGCCCTCAGAGCTTTAAAAGGATTGGTGAAATTACAAGCCCTTGTGAGAGGGTATTTAATCCGTAAACAAGCAGCTGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGAAAATCAACGGAGAAATTCGACGAAACGAAAAGCGAGCACACATGTTCAGTACACAGCCGAAGACTCTCAGCTTCATTCGAAGAAAGCCCCAAAATCGTCGAAATGGACACCGGCCGGCCAAAATCCTGGTCTCGCCGGACGAACATGTCGGCGTCGGATTTCGTGGACGGCCCATTTCCCCAATTGAAGATTCCCGATTGCCGGAATTTCCAAGATTCGGACTGGGGACTCGCCGGAGACGAGTATCGGATGATTTCGACGGCGCAGAGCACTCCTCGATTCGTGAGCTCCGGCGGATTGAACGGCCCTCCAACGCCGGCGAAGAGCATGTGTGCGGATAATTTCTTCAGGGGGCATTTGAATTTTCCGAATTACATGGCGAATACGCAATCGTTCAAGGCGAAATTGAGATCTCATAGCGCGCCGAAACAGAGGCCGGAGCCGGGATCGAAGAAGAGGGTTTCGCTGAACGAATTGATGGAATCGAGAAGCAGTTTAAGTGGGGTTAGAATGCAGAGATCTTGTTCGCATGTTCAAGAAGCCATTAATTTCAAGAATGCTGTGATGAGTAAACTGGATCGGCCGATATCGGAATTCAATAACTTGCAGAGGAGATTGTGA 1176 52.47 MGRATRWLKNLFGIKKEREPTGKNPNSGVKNDKNPTSHFAGDAQICNNPATIPPNLSAAEAAWLKSFYSETENEQSKHARAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWAAVKIQTFFRGFLARKALRALKGLVKLQALVRGYLIRKQAAATLHSMQALIRAQATVRSQRTRKSTEKFDETKSEHTCSVHSRRLSASFEESPKIVEMDTGRPKSWSRRTNMSASDFVDGPFPQLKIPDCRNFQDSDWGLAGDEYRMISTAQSTPRFVSSGGLNGPPTPAKSMCADNFFRGHLNFPNYMANTQSFKAKLRSHSAPKQRPEPGSKKRVSLNELMESRSSLSGVRMQRSCSHVQEAINFKNAVMSKLDRPISEFNNLQRRL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6625789 6627452 + Sed0018059.1 Sed08g0818 722594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0818 391 Gene3D - 102 146 - -
Sed08g0818 391 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Sed08g0818 391 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Sed08g0818 391 ProSiteProfiles IQ motif profile. 120 148 - -
Sed08g0818 391 PANTHER IQ-DOMAIN 5-RELATED 6 348 - -
Sed08g0818 391 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Sed08g0818 391 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Sed08g0818 391 ProSiteProfiles IQ motif profile. 144 171 - -
Sed08g0818 391 Pfam Protein of unknown function (DUF4005) 286 352 IPR025064 -
Sed08g0818 391 MobiDBLite consensus disorder prediction 10 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1415 Sed-Chr7:10848107 Sed08g0818 Sed-Chr8:6625789 1.80E-76 dispersed
Sed08g0818 Sed-Chr8:6625789 Sed09g1621 Sed-Chr9:39659527 1.80E-78 dispersed
Sed12g1812 Sed-Chr12:29224881 Sed08g0818 Sed-Chr8:6625789 3.80E-137 wgd
Sed06g2181 Sed-Chr6:45593304 Sed08g0818 Sed-Chr8:6625789 1.70E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0818 - - - 0.0