Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0848 ATGATAATCGGCGAACGCCACCGCCATTACCCGGCGGTGCATATGACTCCGTTGACGTTGCCGGAGGAGCCTACAAGCGAGACGGGATTTCATTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGACTGCTTTGCCAATGGCGGCGATTATTCTCCCTATCATTTACAGGAATTTTTAGCGGAGTTTCAACGATATCTTCCTCCGACGAACGAGTCGGAGGTTGAATCGGAATCGGAGCTGTCCGGTCGTGAATCGGACGCTCCGGTGGATGCTTATTCTTGCGATCATTTTAGGATTTTCGAGTTTAAAGTTAGGAAGTGTACGAGAGGACGGTCTCATGATTGGACGGAATGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTTTCAATACTCCGGTACGGCGTGTCCTGATTTTCGAAAAGGTAATTGCAAGAAAGGCGATTCGTGCGAGTCTGCTCATGGTGTGTTCGAGTGCTGGTTACATCCTGCTCGTTACAGGACGCAGCCGTGTAAGGACGGGACCAATTGTCGACGAAGAGTCTGTTTCTTCGCTCACACGCCTGAGCAACTTAGGGTTTTGCCTCAGCAGAGTCCGAGAGGTATGAACTCGCCGGATTCGTTTGATGAATCTCCCCTGCGGCTGTCTTTCGATGGTTCCTGTGCTAAATCGTTGCCGTTTCTGTCTTCCCCGGTCTCTGTGACGCCTGTGGACTCTCCACCGGTGTCGCCGATGACTCGGTCGCTCGGCCGGCCTCTCGGCTCGAGTTCTTTAAACGAAATGGTGGCTTCCCTTCGGAACATGCATCTGAGCAAGGTCAAATCCCTACCATCTTCATGGAATGTTCAAATTGGATCTCTCGGTTATCCATCCCGAATCCGCCCGGGATATTGCAGCCTGCCAACAACCCCAACCCGGGCTCCAACTGGTCCAGGAGTGGGGCTGTTGGACTTCATGGGCCGTGGATTCCCGGAGGAACCGGCCATGGAGCGAGTCGAATCGGGACGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTAATCCCGGATGCTAATTCTTCTAGTTCTTCAATCTGCATGCCGGATGTTGATTGGATAACAGAATTGGTCAAGTGA 1149 52.92 MIIGERHRHYPAVHMTPLTLPEEPTSETGFHFPLSGISVSSDCFANGGDYSPYHLQEFLAEFQRYLPPTNESEVESESELSGRESDAPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKFQYSGTACPDFRKGNCKKGDSCESAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRGMNSPDSFDESPLRLSFDGSCAKSLPFLSSPVSVTPVDSPPVSPMTRSLGRPLGSSSLNEMVASLRNMHLSKVKSLPSSWNVQIGSLGYPSRIRPGYCSLPTTPTRAPTGPGVGLLDFMGRGFPEEPAMERVESGRELRAKMLEKLSKENSLIPDANSSSSSICMPDVDWITELVK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6886229 6887837 - Sed0009337.1 Sed08g0848 722624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0848 382 PANTHER UNKEMPT FAMILY MEMBER 55 382 IPR045234 -
Sed08g0848 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 161 IPR000571 GO:0046872(InterPro)
Sed08g0848 382 SMART c3hfinal6 171 194 IPR000571 GO:0046872(InterPro)
Sed08g0848 382 SMART c3hfinal6 136 162 IPR000571 GO:0046872(InterPro)
Sed08g0848 382 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872(InterPro)
Sed08g0848 382 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Sed08g0848 382 MobiDBLite consensus disorder prediction 239 259 - -
Sed08g0848 382 Gene3D - 132 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0848 Sed-Chr8:6886229 Sed13g1846 Sed-Chr13:23420974 1.20E-74 dispersed
Sed11g0026 Sed-Chr11:181821 Sed08g0848 Sed-Chr8:6886229 1.00E-99 wgd
Sed12g1796 Sed-Chr12:29019216 Sed08g0848 Sed-Chr8:6886229 2.60E-178 wgd
Sed03g1772 Sed-Chr3:11706287 Sed08g0848 Sed-Chr8:6886229 1.10E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39312 PF00642 zf-CCCH 0.00013 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0848 - - - 0.0