Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0887 ATGCTGAATTCTGTTAAACCACCAATCAACCCAAAAGCGTGGTCTCTTGGTGCAATAATGTACGAAATGCTTGTTGGTTGTCCACCATTTTATGTTGATGACCCAGTAACTTCATGCCGAAAGATTGTGCATTGGAAAGATCACTTAAAATTCCCTGAGGATATAAGATTATCACCTGAAGCAAAAGACCTGATCAGTAAGCTGCTTTGCGATGCTGAGCATTGGCTTGGTTTCGGTGGCGCAGACCAAATAAAAACTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTATGAAATAGATGCAGCATTTAAGCCTGAAGTCAAAGGGGAGCTCGATACGCAGAATTTTATGCAACTTGATGAGGTTGATCCACCAACTAGATCAGGATCTGGACCAATAAAGAAGGAGGTGGATTCGGGGCAGGTGATTGGTTGTGCTAGGCAACATGGTGGCCTCTATCTTCTTCAAGACAAATGGCATTCGCGTTCGGTCACGTTGATGACTCCCAAAGATCTCAGTTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAATCAAAGGGCTACACCATTCACTTGA 588 42.69 MLNSVKPPINPKAWSLGAIMYEMLVGCPPFYVDDPVTSCRKIVHWKDHLKFPEDIRLSPEAKDLISKLLCDAEHWLGFGGADQIKTHPWFKDTEWDKLYEIDAAFKPEVKGELDTQNFMQLDEVDPPTRSGSGPIKKEVDSGQVIGCARQHGGLYLLQDKWHSRSVTLMTPKDLSFVGYTYKNFEAVNQRATPFT 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7428948 7447272 + Sed0004145.1 Sed08g0887 722663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0887 195 PANTHER MYOTONIC DYSTROPHY S/T KINASE-RELATED 13 183 IPR050839 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0005856(PANTHER)|GO:0018107(PANTHER)|GO:0031032(PANTHER)
Sed08g0887 195 Pfam Protein kinase C terminal domain 109 181 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0887 195 SUPERFAMILY Protein kinase-like (PK-like) 14 130 IPR011009 -
Sed08g0887 195 ProSiteProfiles AGC-kinase C-terminal domain profile. 91 191 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0887 195 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0887 195 Gene3D Transferase(Phosphotransferase) domain 1 14 110 - -
Sed08g0887 195 Pfam Protein kinase domain 13 90 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0887 Sed-Chr8:7428948 Sed13g1884 Sed-Chr13:23834491 1.90E-60 dispersed
Sed12g1747 Sed-Chr12:28512200 Sed08g0887 Sed-Chr8:7428948 2.80E-66 wgd
Sed13g1883 Sed-Chr13:23834491 Sed08g0887 Sed-Chr8:7428948 3.90E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79609 PF00069 Pkinase 4.20E-08 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0887 K08790 - csv:101208238 252.292