Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0890 ATGAGGAAGGGAGGATTCAGCAACAATCTCAACCTCAAGCTCAATCTCCCTCAAGAAGATCATCAATCCATAGCCAAGTTCTTAACGCAGAGCGGCACGTTTAGGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTCCTCAGAGCGAAGTTGAAGCACCTCCTCCGATCAAGCCTACAGATGATCAGTTGAGCTTAGCGGACATAGACATAATCAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAGATTGAGGAGTCTCACCGCAAGCAGATTGCACAGGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGATCTTTAGCTGATTTTTTGAAAAAGGTTAAAAAAGTTCAAGAACCTCATCTTGCTGCTCTTTGTAAGCAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGGCACATCATCCATAGAGATTTAAAGCCTTCTAATTTATTGGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCCGGAGAGGCGAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTGTTGGAGAAAAATACGACAACAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTTGAATGTGCAACTGGAAAATTCCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAGCCTCCTTCTGCTCCAGCCGACCAGTTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTTTGCAAAAGGATCCAAAAGACAGACTGTCAGCACGTGAACTTTTGGAGCATCCTTTCATCAAGATGTATGAAGATACAAATATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1071 41.74 MRKGGFSNNLNLKLNLPQEDHQSIAKFLTQSGTFRDGDLLVNRDGVRIVPQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKVQEPHLAALCKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGEKYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLQKDPKDRLSARELLEHPFIKMYEDTNIDLSSYFNDAGSPLATF 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7463533 7468641 - Sed0025582.1 Sed08g0890 722666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0890 356 PRINTS Tyrosine kinase catalytic domain signature 147 160 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 PRINTS Tyrosine kinase catalytic domain signature 184 202 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 PRINTS Tyrosine kinase catalytic domain signature 250 272 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 Pfam Protein kinase domain 74 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 SUPERFAMILY Protein kinase-like (PK-like) 56 337 IPR011009 -
Sed08g0890 356 FunFam Mitogen-activated protein kinase kinase 6 153 351 - -
Sed08g0890 356 Gene3D Phosphorylase Kinase; domain 1 51 151 - -
Sed08g0890 356 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524(InterPro)
Sed08g0890 356 ProSiteProfiles Protein kinase domain profile. 72 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 SMART serkin_6 72 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 FunFam Mitogen-activated protein kinase kinase 6 42 151 - -
Sed08g0890 356 Gene3D Transferase(Phosphotransferase) domain 1 152 352 - -
Sed08g0890 356 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 19 352 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed08g0890 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 CDD PKc_MAPKK_plant_like 70 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0890 Sed-Chr8:7463533 Sed12g1736 Sed-Chr12:28490804 2.30E-192 dispersed
Sed08g0890 Sed-Chr8:7463533 Sed08g0891 Sed-Chr8:7463533 6.00E-209 tandem
Sed11g0009 Sed-Chr11:81741 Sed08g0890 Sed-Chr8:7463533 4.80E-150 wgd
Sed12g1735 Sed-Chr12:28490804 Sed08g0890 Sed-Chr8:7463533 1.30E-192 wgd
Sed06g0045 Sed-Chr6:259746 Sed08g0890 Sed-Chr8:7463533 2.20E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79610 PF00069 Pkinase 1.10E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0890 K20603 - csv:101204545 677.167