Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0890 | ATGAGGAAGGGAGGATTCAGCAACAATCTCAACCTCAAGCTCAATCTCCCTCAAGAAGATCATCAATCCATAGCCAAGTTCTTAACGCAGAGCGGCACGTTTAGGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTCCTCAGAGCGAAGTTGAAGCACCTCCTCCGATCAAGCCTACAGATGATCAGTTGAGCTTAGCGGACATAGACATAATCAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAGATTGAGGAGTCTCACCGCAAGCAGATTGCACAGGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGATCTTTAGCTGATTTTTTGAAAAAGGTTAAAAAAGTTCAAGAACCTCATCTTGCTGCTCTTTGTAAGCAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGGCACATCATCCATAGAGATTTAAAGCCTTCTAATTTATTGGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCCGGAGAGGCGAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTGTTGGAGAAAAATACGACAACAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTTGAATGTGCAACTGGAAAATTCCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAGCCTCCTTCTGCTCCAGCCGACCAGTTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTTTGCAAAAGGATCCAAAAGACAGACTGTCAGCACGTGAACTTTTGGAGCATCCTTTCATCAAGATGTATGAAGATACAAATATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA | 1071 | 41.74 | MRKGGFSNNLNLKLNLPQEDHQSIAKFLTQSGTFRDGDLLVNRDGVRIVPQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKVQEPHLAALCKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGEKYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLQKDPKDRLSARELLEHPFIKMYEDTNIDLSSYFNDAGSPLATF | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7463533 | 7468641 | - | Sed0025582.1 | Sed08g0890 | 722666 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0890 | 356 | PRINTS | Tyrosine kinase catalytic domain signature | 147 | 160 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g0890 | 356 | PRINTS | Tyrosine kinase catalytic domain signature | 184 | 202 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g0890 | 356 | PRINTS | Tyrosine kinase catalytic domain signature | 250 | 272 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g0890 | 356 | Pfam | Protein kinase domain | 74 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0890 | 356 | SUPERFAMILY | Protein kinase-like (PK-like) | 56 | 337 | IPR011009 | - | |
Sed08g0890 | 356 | FunFam | Mitogen-activated protein kinase kinase 6 | 153 | 351 | - | - | |
Sed08g0890 | 356 | Gene3D | Phosphorylase Kinase; domain 1 | 51 | 151 | - | - | |
Sed08g0890 | 356 | ProSitePatterns | Protein kinases ATP-binding region signature. | 78 | 101 | IPR017441 | GO:0005524(InterPro) | |
Sed08g0890 | 356 | ProSiteProfiles | Protein kinase domain profile. | 72 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0890 | 356 | SMART | serkin_6 | 72 | 332 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed08g0890 | 356 | FunFam | Mitogen-activated protein kinase kinase 6 | 42 | 151 | - | - | |
Sed08g0890 | 356 | Gene3D | Transferase(Phosphotransferase) domain 1 | 152 | 352 | - | - | |
Sed08g0890 | 356 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 19 | 352 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Sed08g0890 | 356 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 190 | 202 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed08g0890 | 356 | CDD | PKc_MAPKK_plant_like | 70 | 336 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0890 | Sed-Chr8:7463533 | Sed12g1736 | Sed-Chr12:28490804 | 2.30E-192 | dispersed | |
Sed08g0890 | Sed-Chr8:7463533 | Sed08g0891 | Sed-Chr8:7463533 | 6.00E-209 | tandem | |
Sed11g0009 | Sed-Chr11:81741 | Sed08g0890 | Sed-Chr8:7463533 | 4.80E-150 | wgd | |
Sed12g1735 | Sed-Chr12:28490804 | Sed08g0890 | Sed-Chr8:7463533 | 1.30E-192 | wgd | |
Sed06g0045 | Sed-Chr6:259746 | Sed08g0890 | Sed-Chr8:7463533 | 2.20E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79610 | PF00069 | Pkinase | 1.10E-72 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0890 | K20603 | - | csv:101204545 | 677.167 |