Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0890 ATGAGGAAGGGAGGATTCAGCAACAATCTCAACCTCAAGCTCAATCTCCCTCAAGAAGATCATCAATCCATAGCCAAGTTCTTAACGCAGAGCGGCACGTTTAGGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTCCTCAGAGCGAAGTTGAAGCACCTCCTCCGATCAAGCCTACAGATGATCAGTTGAGCTTAGCGGACATAGACATAATCAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAGATTGAGGAGTCTCACCGCAAGCAGATTGCACAGGAACTGAAAATCAATCAATCAGCGCAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCAATATATATCATTTTAGAGTACATGGATGGTGGATCTTTAGCTGATTTTTTGAAAAAGGTTAAAAAAGTTCAAGAACCTCATCTTGCTGCTCTTTGTAAGCAGGTGCTGAAGGGGTTGATGTACCTTCACCATGAAAGGCACATCATCCATAGAGATTTAAAGCCTTCTAATTTATTGGTAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCCGGAGAGGCGAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTGTTGGAGAAAAATACGACAACAAAAGTGACATTTGGAGCTTGGGGCTGATATTACTTGAATGTGCAACTGGAAAATTCCCTTATTCTCCACCAGAGCAAGATGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAGCCTCCTTCTGCTCCAGCCGACCAGTTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTTTGCAAAAGGATCCAAAAGACAGACTGTCAGCACGTGAACTTTTGGAGCATCCTTTCATCAAGATGTATGAAGATACAAATATTGACCTGTCATCTTACTTCAATGATGCAGGATCTCCACTTGCAACTTTCTAA 1071 41.74 MRKGGFSNNLNLKLNLPQEDHQSIAKFLTQSGTFRDGDLLVNRDGVRIVPQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKVQEPHLAALCKQVLKGLMYLHHERHIIHRDLKPSNLLVNHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGEKYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACLQKDPKDRLSARELLEHPFIKMYEDTNIDLSSYFNDAGSPLATF 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7463533 7468641 - Sed0025582.1 Sed08g0890 722666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0890 356 PRINTS Tyrosine kinase catalytic domain signature 147 160 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 PRINTS Tyrosine kinase catalytic domain signature 184 202 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 PRINTS Tyrosine kinase catalytic domain signature 250 272 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 Pfam Protein kinase domain 74 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 SUPERFAMILY Protein kinase-like (PK-like) 56 337 IPR011009 -
Sed08g0890 356 FunFam Mitogen-activated protein kinase kinase 6 153 351 - -
Sed08g0890 356 Gene3D Phosphorylase Kinase; domain 1 51 151 - -
Sed08g0890 356 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524(InterPro)
Sed08g0890 356 ProSiteProfiles Protein kinase domain profile. 72 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 SMART serkin_6 72 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 FunFam Mitogen-activated protein kinase kinase 6 42 151 - -
Sed08g0890 356 Gene3D Transferase(Phosphotransferase) domain 1 152 352 - -
Sed08g0890 356 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 19 352 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed08g0890 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g0890 356 CDD PKc_MAPKK_plant_like 70 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0890 K20603 - - csv:101204545 677.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0890 Sed-Chr8:7463533 Sed12g1736 Sed-Chr12:28490804 2.30E-192 dispersed
Sed08g0890 Sed-Chr8:7463533 Sed08g0891 Sed-Chr8:7463533 6.00E-209 tandem
Sed11g0009 Sed-Chr11:81741 Sed08g0890 Sed-Chr8:7463533 4.80E-150 wgd
Sed12g1735 Sed-Chr12:28490804 Sed08g0890 Sed-Chr8:7463533 1.30E-192 wgd
Sed06g0045 Sed-Chr6:259746 Sed08g0890 Sed-Chr8:7463533 2.20E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g0890 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed08g0891 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed12g1735 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1736 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1737 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed11g0009 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0012 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0010 . 32 312 MAP Kinase Kinase Gene Family AT4G26070 67.0 1.4e-109 394.0
Sed03g1751 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 1.8e-106 383.6
Sed11g0011 . 1 249 MAP Kinase Kinase Gene Family AT4G26070 65.2 1.6e-94 344.0
Sed03g1752 . 26 242 MAP Kinase Kinase Gene Family AT4G26070 52.5 5.6e-63 239.2
Sed08g0890 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed08g0891 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed12g1735 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1736 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1737 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed11g0009 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0012 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT4G29810 62.4 1.3e-109 394.0
Sed03g1751 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.8 1.5e-108 390.6
Sed11g0011 . 1 223 MAP Kinase Kinase Gene Family AT4G29810 65.6 4.8e-83 305.8
Sed03g1752 . 10 239 MAP Kinase Kinase Gene Family AT4G29810 58.8 6.3e-75 278.9
Sed08g1406 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 78.7 8.9e-227 783.9
Sed06g0519 . 101 432 MAP Kinase Kinase Gene Family AT5G40440 59.4 1.6e-111 401.0
Sed11g0011 . 35 247 MAP Kinase Kinase Gene Family AT5G40440 52.3 1.4e-57 221.9
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.0 9.4e-133 471.1
Sed06g0045 . 68 352 MAP Kinase Kinase Gene Family AT1G51660 75.1 2.3e-123 439.9
Sed01g1782 . 3 313 MAP Kinase Kinase Gene Family AT1G51660 50.2 2.3e-83 307.0
Sed08g2774 . 52 320 MAP Kinase Kinase Gene Family AT1G51660 53.2 7.0e-80 295.4
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT3G21220 66.5 1.3e-128 457.2
Sed06g0045 . 66 352 MAP Kinase Kinase Gene Family AT3G21220 73.5 2.0e-124 443.4
Sed01g1782 . 32 311 MAP Kinase Kinase Gene Family AT3G21220 53.9 5.5e-82 302.4
Sed08g2774 . 52 316 MAP Kinase Kinase Gene Family AT3G21220 52.8 3.9e-80 296.2
Sed03g1751 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 82.8 4.2e-170 595.1
Sed12g1735 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1736 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1737 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed08g0890 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed08g0891 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed11g0009 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed11g0012 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed03g1752 . 1 234 MAP Kinase Kinase Gene Family AT5G56580 83.4 2.0e-108 390.2
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT5G56580 55.2 1.5e-95 347.4
Sed11g0011 . 1 238 MAP Kinase Kinase Gene Family AT5G56580 60.4 3.3e-82 303.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G18350 64.2 2.8e-106 382.9
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G18350 60.6 2.2e-103 373.2
Sed06g0045 . 68 325 MAP Kinase Kinase Gene Family AT1G18350 51.9 4.4e-75 279.3
Sed01g1782 . 1 295 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.8e-77 285.4
Sed08g2774 . 52 302 MAP Kinase Kinase Gene Family AT3G06230 56.1 2.9e-76 283.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G73500 66.7 7.7e-112 401.4
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G73500 63.7 6.1e-109 391.7
Sed06g0045 . 69 325 MAP Kinase Kinase Gene Family AT1G73500 52.1 1.1e-76 284.6
Sed06g2275 . 72 331 MAP Kinase Kinase Gene Family AT1G73500 51.7 5.2e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79610 PF00069 Pkinase 1.10E-72 CL0016 Sed PK