Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0904 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTACGGATTTTCGATAGTCAAGGAGGAGGTGATGCTTATGTGAGTAAAGATCTGGATAAAAGTTCTGTTGCTTCTTTACCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAAGTGCGCGATTTCGCAATCCGTGGTTACGAGCTCTCCTTCACACGAGGTTGCTAGGATGAGTCCCGTTAAACCTCCGAAAATTCCAGTTGAATCGGCAGTTCGGCGCCCTTCGCTTGCTCGTTCGGCGTTTTCCAAGGCGAAATCGAGGCTAGTAGAGCCGCCTTGTCCTGATGGCTTGAATTTGGCAGAAGAAAAGGATAAAGAAAAATTAGCATCTGCTGGTTCTTCATTCTATAGCTCTCCGAAGATGGACTCCCCAGCAAAGATGACCACTGGTACTAGTCCTAGAGAAGCGTTGAAGTCGGCCCCGATTACTCCCAAAACACCATTGATTGGAAGTGAGGAGGAAGATGATGAAGAAGTATACAGGACTGCAGAACTGAAAGTGAAAGAACGATCAGGGAAGAAGGTTAAAAGGACCATTTTATTCGAATGGGTTGCATTTTTGTGCTTAACAGGGTGTTTGGTTGCTAGCTTAACGGTAGACAAGTTGGTGAGTAAAGAGATCTGGGGATTAGGATTGTGGAAATGGTGTGTTCTGGTATTAGTTATGTTCTGTGGTCGTTTATTTTCACAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAGAGAAAGGTTCTATATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTCTTTATTTGGCTGGCTTTGGTTCTTCTAGCTTGGGGTTTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGCCAAAGAAATTTTGAATTATGTTACGCGAGCTCTTGGTGCTTCTCTCATTGGAGCAGCATTATGGCTAGTGAAAACATTGCTGGTGAAGATACTAGCTGCTTCTTTTCAATGTACTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTCCGCACTCTATCGGGACCTCCGATGATGGAGATGGCTGAGAGGGTCGGGAGAGGGGTAAGCACGGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGCGATGGTGGGAATGAAGGGAAGGAAGAGGTGATCGATGTTGATAAACTCAAAAAAATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGACTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCGAATACAATAGAGAATTTTGAAGATGAAGAGGTTGAGCAAAAAGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCAGGAATGTCGCAAAACCCGGTAGCAAGTATATAGATGAAGAGGACCTCTTTCGTTTCATGAGTAAGGAGGAAATAGATAATGTGCTGCCATTGTTTGAAGGAGCAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTCAATGTTTATGTCGAACGCAGGTCCCTAGCCCATTCATTGAATGACACCAAGACTGCAATAGAGGAGCTTAACAAGCTTGCTTCCGCAATTATACTGATAGTGATTATCATTGAATGGTTACTTCTGATGGGTTTTTTGACGACGCACGTACTCGTCTTCATTTCATCGCAGCTTCTGTTGGTAGGTTTCATGTTTGGCAACACTGCCCGAACTATATTTGAAGCCATCATATTCGTATTTGTGATGCATCCCTATGATGTGGGGGATCGTTGTGTTGTAGATGGTGTGCAGTTGATTGTTGAAGAAATGAACATTTTGACCACAATTTTCTTGAGATACGACAATGAGAAGATCTTCTATCCAAACTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTATAGGAGCCCCGAAATGAGCGATTCGATCGAATTTTCTGTCGACTTTTCCACATCAATTGAAAGCATTGGAGCCCTAAAAGCAAGAGTAAAATCATACTTAGAAAGCAAACCTCAGTTCTGGCGTCCGAACCACAGTATCATCGTGAAGGAGATCGAAGACGTCAACAAGATGAAAATGGCTCTGTATGTCAATCACACCATAAACTTTCAGAACTATGGCGACAAGAGCAGTCGCAGATCGGACCTAGTCTTGGAGCTGAAGAAAGTTTTCGAAGATCTCGGCATCAAGTATCATCTGCTACCTCAAGAAGTTCAGCTCAACTGTGTGAGCTCAGCAGCTTCAACGGTTTTACCCTCGCGGAGATGA 2310 42.64 MADKKGTEQVVLRIFDSQGGGDAYVSKDLDKSSVASLPDFELKETRSFKCAISQSVVTSSPSHEVARMSPVKPPKIPVESAVRRPSLARSAFSKAKSRLVEPPCPDGLNLAEEKDKEKLASAGSSFYSSPKMDSPAKMTTGTSPREALKSAPITPKTPLIGSEEEDDEEVYRTAELKVKERSGKKVKRTILFEWVAFLCLTGCLVASLTVDKLVSKEIWGLGLWKWCVLVLVMFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLALVLLAWGLLFDQSSKRSKKAKEILNYVTRALGASLIGAALWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPMMEMAERVGRGVSTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFEDEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEIDNVLPLFEGAVETGKIKRKTLKNWLVNVYVERRSLAHSLNDTKTAIEELNKLASAIILIVIIIEWLLLMGFLTTHVLVFISSQLLLVGFMFGNTARTIFEAIIFVFVMHPYDVGDRCVVDGVQLIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARVKSYLESKPQFWRPNHSIIVKEIEDVNKMKMALYVNHTINFQNYGDKSSRRSDLVLELKKVFEDLGIKYHLLPQEVQLNCVSSAASTVLPSRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7551552 7554954 + Sed0008515.2 Sed08g0904 722680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0904 769 MobiDBLite consensus disorder prediction 122 147 - -
Sed08g0904 769 Pfam Mechanosensitive ion channel, beta-domain 591 647 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g0904 769 MobiDBLite consensus disorder prediction 59 84 - -
Sed08g0904 769 MobiDBLite consensus disorder prediction 122 164 - -
Sed08g0904 769 PIRSF Memb_At2g17000 25 769 IPR016688 -
Sed08g0904 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 61 760 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Sed08g0904 769 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Sed08g0904 769 Gene3D - 598 647 IPR023408 -
Sed08g0904 769 FunFam Predicted mechanosensitive ion channel 598 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0904 Sed-Chr8:7551552 Sed12g1723 Sed-Chr12:28408983 0.00E+00 dispersed
Sed08g0903 Sed-Chr8:7551552 Sed08g0904 Sed-Chr8:7551552 0.00E+00 tandem
Sed08g0904 Sed-Chr8:7551552 Sed08g0905 Sed-Chr8:7551552 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0904 K22048 - csv:101209209 1274.23