Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0904 ATGGCGGATAAGAAAGGAACGGAACAAGTTGTTTTACGGATTTTCGATAGTCAAGGAGGAGGTGATGCTTATGTGAGTAAAGATCTGGATAAAAGTTCTGTTGCTTCTTTACCTGATTTTGAGCTAAAAGAAACTCGGAGTTTTAAGTGCGCGATTTCGCAATCCGTGGTTACGAGCTCTCCTTCACACGAGGTTGCTAGGATGAGTCCCGTTAAACCTCCGAAAATTCCAGTTGAATCGGCAGTTCGGCGCCCTTCGCTTGCTCGTTCGGCGTTTTCCAAGGCGAAATCGAGGCTAGTAGAGCCGCCTTGTCCTGATGGCTTGAATTTGGCAGAAGAAAAGGATAAAGAAAAATTAGCATCTGCTGGTTCTTCATTCTATAGCTCTCCGAAGATGGACTCCCCAGCAAAGATGACCACTGGTACTAGTCCTAGAGAAGCGTTGAAGTCGGCCCCGATTACTCCCAAAACACCATTGATTGGAAGTGAGGAGGAAGATGATGAAGAAGTATACAGGACTGCAGAACTGAAAGTGAAAGAACGATCAGGGAAGAAGGTTAAAAGGACCATTTTATTCGAATGGGTTGCATTTTTGTGCTTAACAGGGTGTTTGGTTGCTAGCTTAACGGTAGACAAGTTGGTGAGTAAAGAGATCTGGGGATTAGGATTGTGGAAATGGTGTGTTCTGGTATTAGTTATGTTCTGTGGTCGTTTATTTTCACAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAGAGAAAGGTTCTATATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTCTTTATTTGGCTGGCTTTGGTTCTTCTAGCTTGGGGTTTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGCCAAAGAAATTTTGAATTATGTTACGCGAGCTCTTGGTGCTTCTCTCATTGGAGCAGCATTATGGCTAGTGAAAACATTGCTGGTGAAGATACTAGCTGCTTCTTTTCAATGTACTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTCCGCACTCTATCGGGACCTCCGATGATGGAGATGGCTGAGAGGGTCGGGAGAGGGGTAAGCACGGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGCGATGGTGGGAATGAAGGGAAGGAAGAGGTGATCGATGTTGATAAACTCAAAAAAATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGACTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCGAATACAATAGAGAATTTTGAAGATGAAGAGGTTGAGCAAAAAGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAAATTTTCAGGAATGTCGCAAAACCCGGTAGCAAGTATATAGATGAAGAGGACCTCTTTCGTTTCATGAGTAAGGAGGAAATAGATAATGTGCTGCCATTGTTTGAAGGAGCAGTTGAGACTGGGAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTCAATGTTTATGTCGAACGCAGGTCCCTAGCCCATTCATTGAATGACACCAAGACTGCAATAGAGGAGCTTAACAAGCTTGCTTCCGCAATTATACTGATAGTGATTATCATTGAATGGTTACTTCTGATGGGTTTTTTGACGACGCACGTACTCGTCTTCATTTCATCGCAGCTTCTGTTGGTAGGTTTCATGTTTGGCAACACTGCCCGAACTATATTTGAAGCCATCATATTCGTATTTGTGATGCATCCCTATGATGTGGGGGATCGTTGTGTTGTAGATGGTGTGCAGTTGATTGTTGAAGAAATGAACATTTTGACCACAATTTTCTTGAGATACGACAATGAGAAGATCTTCTATCCAAACTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTATAGGAGCCCCGAAATGAGCGATTCGATCGAATTTTCTGTCGACTTTTCCACATCAATTGAAAGCATTGGAGCCCTAAAAGCAAGAGTAAAATCATACTTAGAAAGCAAACCTCAGTTCTGGCGTCCGAACCACAGTATCATCGTGAAGGAGATCGAAGACGTCAACAAGATGAAAATGGCTCTGTATGTCAATCACACCATAAACTTTCAGAACTATGGCGACAAGAGCAGTCGCAGATCGGACCTAGTCTTGGAGCTGAAGAAAGTTTTCGAAGATCTCGGCATCAAGTATCATCTGCTACCTCAAGAAGTTCAGCTCAACTGTGTGAGCTCAGCAGCTTCAACGGTTTTACCCTCGCGGAGATGA 2310 42.64 MADKKGTEQVVLRIFDSQGGGDAYVSKDLDKSSVASLPDFELKETRSFKCAISQSVVTSSPSHEVARMSPVKPPKIPVESAVRRPSLARSAFSKAKSRLVEPPCPDGLNLAEEKDKEKLASAGSSFYSSPKMDSPAKMTTGTSPREALKSAPITPKTPLIGSEEEDDEEVYRTAELKVKERSGKKVKRTILFEWVAFLCLTGCLVASLTVDKLVSKEIWGLGLWKWCVLVLVMFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLALVLLAWGLLFDQSSKRSKKAKEILNYVTRALGASLIGAALWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPMMEMAERVGRGVSTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFEDEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEIDNVLPLFEGAVETGKIKRKTLKNWLVNVYVERRSLAHSLNDTKTAIEELNKLASAIILIVIIIEWLLLMGFLTTHVLVFISSQLLLVGFMFGNTARTIFEAIIFVFVMHPYDVGDRCVVDGVQLIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIEFSVDFSTSIESIGALKARVKSYLESKPQFWRPNHSIIVKEIEDVNKMKMALYVNHTINFQNYGDKSSRRSDLVLELKKVFEDLGIKYHLLPQEVQLNCVSSAASTVLPSRR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7551552 7554954 + Sed0008515.2 Sed08g0904 722680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0904 769 MobiDBLite consensus disorder prediction 122 147 - -
Sed08g0904 769 Pfam Mechanosensitive ion channel, beta-domain 591 647 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g0904 769 MobiDBLite consensus disorder prediction 59 84 - -
Sed08g0904 769 MobiDBLite consensus disorder prediction 122 164 - -
Sed08g0904 769 PIRSF Memb_At2g17000 25 769 IPR016688 -
Sed08g0904 769 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 61 760 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Sed08g0904 769 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Sed08g0904 769 Gene3D - 598 647 IPR023408 -
Sed08g0904 769 FunFam Predicted mechanosensitive ion channel 598 647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0904 K22048 - - csv:101209209 1274.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0904 Sed-Chr8:7551552 Sed12g1723 Sed-Chr12:28408983 0.00E+00 dispersed
Sed08g0903 Sed-Chr8:7551552 Sed08g0904 Sed-Chr8:7551552 0.00E+00 tandem
Sed08g0904 Sed-Chr8:7551552 Sed08g0905 Sed-Chr8:7551552 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0157 . 153 541 Mechanosensitive Ion Channel Family AT4G00290 66.8 1.0e-150 531.2
Sed12g0158 . 153 398 Mechanosensitive Ion Channel Family AT4G00290 65.9 8.6e-89 325.5
Sed13g1078 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed13g1077 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed13g1079 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed04g0205 . 15 663 Mechanosensitive Ion Channel Family AT5G10490 58.4 1.1e-192 671.0
Sed03g1409 . 27 706 Mechanosensitive Ion Channel Family AT5G10490 55.6 3.3e-192 669.5
Sed03g1410 . 27 710 Mechanosensitive Ion Channel Family AT5G10490 55.3 1.8e-190 663.7
Sed04g0205 . 15 661 Mechanosensitive Ion Channel Family AT1G58200 55.9 1.6e-194 677.2
Sed03g1409 . 10 686 Mechanosensitive Ion Channel Family AT1G58200 54.5 4.2e-187 652.5
Sed03g1410 . 10 690 Mechanosensitive Ion Channel Family AT1G58200 54.2 2.3e-185 646.7
Sed13g1078 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed13g1077 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed13g1079 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed05g3519 . 41 903 Mechanosensitive Ion Channel Family AT1G53470 56.7 2.9e-265 912.5
Sed01g0647 . 45 883 Mechanosensitive Ion Channel Family AT1G53470 55.0 1.1e-251 867.5
Sed04g3825 . 76 916 Mechanosensitive Ion Channel Family AT1G53470 51.0 8.0e-231 798.1
Sed05g2203 . 63 907 Mechanosensitive Ion Channel Family AT1G53470 50.2 4.4e-229 792.3
Sed05g3520 . 41 645 Mechanosensitive Ion Channel Family AT1G53470 52.1 1.7e-156 551.2
Sed05g3519 . 41 898 Mechanosensitive Ion Channel Family AT3G14810 52.5 4.7e-236 815.5
Sed01g0647 . 68 878 Mechanosensitive Ion Channel Family AT3G14810 54.7 3.1e-232 802.7
Sed05g3519 . 49 903 Mechanosensitive Ion Channel Family AT1G78610 58.8 6.3e-273 937.9
Sed01g0647 . 49 883 Mechanosensitive Ion Channel Family AT1G78610 57.4 1.6e-268 923.3
Sed05g2203 . 62 913 Mechanosensitive Ion Channel Family AT1G78610 54.4 1.4e-251 867.1
Sed04g3825 . 68 915 Mechanosensitive Ion Channel Family AT1G78610 54.5 2.0e-247 853.2
Sed01g2461 . 112 689 Mechanosensitive Ion Channel Family AT1G78610 50.6 6.3e-164 575.9
Sed05g3520 . 49 645 Mechanosensitive Ion Channel Family AT1G78610 53.9 2.9e-161 567.0
Sed05g3519 . 193 899 Mechanosensitive Ion Channel Family AT2G17000 60.4 3.1e-232 802.7
Sed01g0647 . 191 879 Mechanosensitive Ion Channel Family AT2G17000 61.1 1.1e-229 794.3
Sed05g2203 . 165 902 Mechanosensitive Ion Channel Family AT2G17000 54.6 1.4e-216 750.7
Sed04g3825 . 248 917 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.8e-210 728.0
Sed05g3520 . 193 645 Mechanosensitive Ion Channel Family AT2G17000 57.2 1.1e-131 468.8
Sed05g2203 . 4 656 Mechanosensitive Ion Channel Family AT2G17010 50.5 4.3e-160 562.8
Sed05g3519 . 1 642 Mechanosensitive Ion Channel Family AT2G17010 50.9 2.1e-154 543.9
Sed05g3520 . 1 642 Mechanosensitive Ion Channel Family AT2G17010 50.9 2.1e-154 543.9
Sed01g0647 . 1 622 Mechanosensitive Ion Channel Family AT2G17010 50.1 2.4e-150 530.4
Sed05g1786 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed05g1787 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed05g1789 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed08g0903 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed08g0904 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed08g0905 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed12g1723 . 48 732 Mechanosensitive Ion Channel Family AT5G12080 53.7 8.0e-200 694.9
Sed05g1786 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed05g1787 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed05g1789 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed13g1901 . 69 714 Mechanosensitive Ion Channel Family AT5G12080 53.8 2.3e-183 640.2
Sed13g1900 . 69 714 Mechanosensitive Ion Channel Family AT5G12080 52.4 1.0e-175 614.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47