Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0909 | ATGAGCACCAGAAGTATGTTTCCTTTCACCTCAGCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGATCTTCTTTTCAGTATGAAAAGAAGTAACTTGGACTCTTCTTTCACTTCTAAGCTCTTCCCTCTCCATCCTCAACATGTTGGGTGGAACTATATGCAAATGGGGTTAGGGAGGAAAATAGACCCAGAACCAGGGAGATGCAGAAGAACAGATGGGAAAAAATGGAGATGTTCAAAAGAGGCATATCCAGATTCAAAATATTGTGAGAGGCACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAATGATATTAACAACCATGTCTCAAATCCAGCATTTTCTTCCTTCACAAACAACAACTCTTCCTTACTCTCCTATAGGTCCTTCCCTGCTCATCAAATATCTTCAACTCCTAATGGAAATGCCATATCAACCCAAGACACTAATACCCTCCTGCTTCTGGAATCTGGCGGTTCTTACTCAGACAGAAACTCAGATTACAGAAGTAGGTACAGTTATGGGCTAAAAGAGCAAGTGGGGGAGCATGTTTTCTTCTCGCAAGAACCATCGGAAACTACTGCAAGAGTTGATTCTCTGCAACTGACACCACTAACAATGAGTCGTTCTTCTTTGTCTCCAAAACAGAACAACTCTCCTTACCAAAGTGATCAATCTTGCTATCAGCTTCATCAGAGCTTCACAGACACTTACAAGCAACAAAAGAGAGACGAATCACAGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGAAACATGGCTTGATTTCGAAGATAAATCGTCAAATACTAGCTCAGTTTCCTCCACTCAGCTCTCAATTTCCATTCCCACTGCTTCCAACAATGACTTCCATATTTTCAGATCCAAAAACCCTTGA | 984 | 41.36 | MSTRSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSMKRSNLDSSFTSKLFPLHPQHVGWNYMQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINNHVSNPAFSSFTNNNSSLLSYRSFPAHQISSTPNGNAISTQDTNTLLLLESGGSYSDRNSDYRSRYSYGLKEQVGEHVFFSQEPSETTARVDSLQLTPLTMSRSSLSPKQNNSPYQSDQSCYQLHQSFTDTYKQQKRDESQKTVHRFFDEWPPKERETWLDFEDKSSNTSSVSSTQLSISIPTASNNDFHIFRSKNP | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7619195 | 7620352 | - | Sed0012312.1 | Sed08g0909 | 722685 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0909 | 327 | Pfam | QLQ | 8 | 39 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed08g0909 | 327 | ProSiteProfiles | QLQ domain profile. | 8 | 43 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed08g0909 | 327 | ProSiteProfiles | WRC domain profile. | 76 | 120 | IPR014977 | - | |
Sed08g0909 | 327 | Pfam | WRC | 77 | 118 | IPR014977 | - | |
Sed08g0909 | 327 | PANTHER | GROWTH-REGULATING FACTOR 5 | 2 | 313 | IPR031137 | GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro) | |
Sed08g0909 | 327 | SMART | QLQ_2 | 7 | 43 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0389 | Sed-Chr1:2963208 | Sed08g0909 | Sed-Chr8:7619195 | 9.40E-52 | dispersed | |
Sed05g3708 | Sed-Chr5:45098256 | Sed08g0909 | Sed-Chr8:7619195 | 8.80E-45 | dispersed | |
Sed06g0051 | Sed-Chr6:308788 | Sed08g0909 | Sed-Chr8:7619195 | 2.40E-58 | dispersed | |
Sed06g2262 | Sed-Chr6:46200318 | Sed08g0909 | Sed-Chr8:7619195 | 5.30E-56 | dispersed | |
Sed08g0909 | Sed-Chr8:7619195 | Sed14g0947 | Sed-Chr14:18554441 | 8.30E-32 | dispersed | |
Sed10g1156 | Sed-Chr10:16350950 | Sed08g0909 | Sed-Chr8:7619195 | 1.00E-37 | transposed | |
Sed12g1716 | Sed-Chr12:28346593 | Sed08g0909 | Sed-Chr8:7619195 | 6.70E-109 | wgd | |
Sed03g1822 | Sed-Chr3:12067691 | Sed08g0909 | Sed-Chr8:7619195 | 1.60E-86 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39316 | PF08879 | WRC | 1.10E-20 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0909 | - | - | - | 0.0 |