Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0909 ATGAGCACCAGAAGTATGTTTCCTTTCACCTCAGCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGATCTTCTTTTCAGTATGAAAAGAAGTAACTTGGACTCTTCTTTCACTTCTAAGCTCTTCCCTCTCCATCCTCAACATGTTGGGTGGAACTATATGCAAATGGGGTTAGGGAGGAAAATAGACCCAGAACCAGGGAGATGCAGAAGAACAGATGGGAAAAAATGGAGATGTTCAAAAGAGGCATATCCAGATTCAAAATATTGTGAGAGGCACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAATGATATTAACAACCATGTCTCAAATCCAGCATTTTCTTCCTTCACAAACAACAACTCTTCCTTACTCTCCTATAGGTCCTTCCCTGCTCATCAAATATCTTCAACTCCTAATGGAAATGCCATATCAACCCAAGACACTAATACCCTCCTGCTTCTGGAATCTGGCGGTTCTTACTCAGACAGAAACTCAGATTACAGAAGTAGGTACAGTTATGGGCTAAAAGAGCAAGTGGGGGAGCATGTTTTCTTCTCGCAAGAACCATCGGAAACTACTGCAAGAGTTGATTCTCTGCAACTGACACCACTAACAATGAGTCGTTCTTCTTTGTCTCCAAAACAGAACAACTCTCCTTACCAAAGTGATCAATCTTGCTATCAGCTTCATCAGAGCTTCACAGACACTTACAAGCAACAAAAGAGAGACGAATCACAGAAGACAGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGAAACATGGCTTGATTTCGAAGATAAATCGTCAAATACTAGCTCAGTTTCCTCCACTCAGCTCTCAATTTCCATTCCCACTGCTTCCAACAATGACTTCCATATTTTCAGATCCAAAAACCCTTGA 984 41.36 MSTRSMFPFTSAQWQELEHQALIFKYMVSGIPIPPDLLFSMKRSNLDSSFTSKLFPLHPQHVGWNYMQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDINNHVSNPAFSSFTNNNSSLLSYRSFPAHQISSTPNGNAISTQDTNTLLLLESGGSYSDRNSDYRSRYSYGLKEQVGEHVFFSQEPSETTARVDSLQLTPLTMSRSSLSPKQNNSPYQSDQSCYQLHQSFTDTYKQQKRDESQKTVHRFFDEWPPKERETWLDFEDKSSNTSSVSSTQLSISIPTASNNDFHIFRSKNP 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7619195 7620352 - Sed0012312.1 Sed08g0909 722685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0909 327 Pfam QLQ 8 39 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed08g0909 327 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed08g0909 327 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Sed08g0909 327 Pfam WRC 77 118 IPR014977 -
Sed08g0909 327 PANTHER GROWTH-REGULATING FACTOR 5 2 313 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Sed08g0909 327 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0389 Sed-Chr1:2963208 Sed08g0909 Sed-Chr8:7619195 9.40E-52 dispersed
Sed05g3708 Sed-Chr5:45098256 Sed08g0909 Sed-Chr8:7619195 8.80E-45 dispersed
Sed06g0051 Sed-Chr6:308788 Sed08g0909 Sed-Chr8:7619195 2.40E-58 dispersed
Sed06g2262 Sed-Chr6:46200318 Sed08g0909 Sed-Chr8:7619195 5.30E-56 dispersed
Sed08g0909 Sed-Chr8:7619195 Sed14g0947 Sed-Chr14:18554441 8.30E-32 dispersed
Sed10g1156 Sed-Chr10:16350950 Sed08g0909 Sed-Chr8:7619195 1.00E-37 transposed
Sed12g1716 Sed-Chr12:28346593 Sed08g0909 Sed-Chr8:7619195 6.70E-109 wgd
Sed03g1822 Sed-Chr3:12067691 Sed08g0909 Sed-Chr8:7619195 1.60E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39316 PF08879 WRC 1.10E-20 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0909 - - - 0.0