Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g0930 ATGGCTTTGCATTCCAACAATGGCGGCGAAGTCGGAGCGGATAACTCTCTTCAATCCATCTGTTACAAGCGCGGTTCCTTGCGGCTGCTCGATCAGAGGAAGCTCCCTCTGGAAACTGTTTATTTGGACATCAAGGATGCAGCAGATGGATGGAATGCAATAAGGGATATGGTAGTTCGTGGGGCACCTGCCATTGCTATTGCAGCTGCTCTTGCTTTGGCAGCTGAAGTGTGCAACTCGAACACTTTTAATGGGACGTCCAACGATGCAGCATCGTTCATTGCTGAGAAATTGGACTACTTAGTCTCAAGCCGGCCAACTGCTGTTAATCTTGCTGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGGGCTGCTGCTATCTCTTCTGATGCCAAGAGTGTCTTCCAAGCATATATTGAGGCTGCTGAAGCAATGCTGGAGGATGACGTTGCTTCAAATAAAGCCATTGGGTCCTATGGAGCAAATTGTATCTGTGATCAACAAAAATCGTTGGAAAAGTTTTCTGTTCTAACGCATTGCAATACGGGCAGTCTAGCAACAGCTGGATACGGTACTGCCCTTGGTGTAATCCGTGCACTTCACTCTGCCGGTGTGTTAGAACGGGCATACTGTACCGAAACACGACCCTTTAATCAAGGATCTCGACTCACGGCCTATGAATTGGTCCATGAAAAGATACCTTCTACCCTGATAGCAGATTCTGCTGCTGCCGCCTTGATGAAATTCGGAAGGGTGAATGCCGTGGTAGTTGGGGCTGATCGTGTAGCTGCAAATGGTGATACCGCAAATAAGATTGGAACCTATAGCCTTGCATTGTGTGCAATGCATCACAAGATTCCATTCTTTGTGGCTGCACCTTTGACTTCCATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATCGAGGAAAGGTCTCCCAAGGAGTTATTGAACACACGTGGAGGGCTCGGCGAGCAAGTTGCTGCATCTGGCATTGCTGTCTGGAACCCGGCTTTCGATGTTACTCCTGCTCATCTGATCTCTGGAATCATAACAGAAAAGGGAGTCATCACAAAGGTGGGCTCTGAATCTTTCAACATAAAGGAGTTCGTTCAAAAGACCGCGGCGACTCCATAG 1143 47.16 MALHSNNGGEVGADNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDAADGWNAIRDMVVRGAPAIAIAAALALAAEVCNSNTFNGTSNDAASFIAEKLDYLVSSRPTAVNLADAAIKLKEIVSGAAAISSDAKSVFQAYIEAAEAMLEDDVASNKAIGSYGANCICDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHKIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNTRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKVGSESFNIKEFVQKTAATP 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7855179 7860499 - Sed0012066.2 Sed08g0930 722706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g0930 380 FunFam Methylthioribose-1-phosphate isomerase 173 370 - -
Sed08g0930 380 Gene3D - 208 373 IPR042529 -
Sed08g0930 380 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 18 361 IPR005251 -
Sed08g0930 380 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 14 376 - GO:0019509(PANTHER)|GO:0046523(PANTHER)
Sed08g0930 380 SUPERFAMILY NagB/RpiA/CoA transferase-like 17 361 IPR037171 -
Sed08g0930 380 Pfam Initiation factor 2 subunit family 59 360 IPR000649 GO:0044237(InterPro)
Sed08g0930 380 Gene3D - 15 207 IPR027363 -
Sed08g0930 380 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 44 361 IPR011559 GO:0044249(InterPro)
Sed08g0930 380 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 370 IPR005251 -
Sed08g0930 380 FunFam Methylthioribose-1-phosphate isomerase 15 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0929 Sed-Chr8:7855179 Sed08g0930 Sed-Chr8:7855179 1.40E-208 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g0930 K08963 - csv:101210526 665.996