Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g0930 | ATGGCTTTGCATTCCAACAATGGCGGCGAAGTCGGAGCGGATAACTCTCTTCAATCCATCTGTTACAAGCGCGGTTCCTTGCGGCTGCTCGATCAGAGGAAGCTCCCTCTGGAAACTGTTTATTTGGACATCAAGGATGCAGCAGATGGATGGAATGCAATAAGGGATATGGTAGTTCGTGGGGCACCTGCCATTGCTATTGCAGCTGCTCTTGCTTTGGCAGCTGAAGTGTGCAACTCGAACACTTTTAATGGGACGTCCAACGATGCAGCATCGTTCATTGCTGAGAAATTGGACTACTTAGTCTCAAGCCGGCCAACTGCTGTTAATCTTGCTGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGGGCTGCTGCTATCTCTTCTGATGCCAAGAGTGTCTTCCAAGCATATATTGAGGCTGCTGAAGCAATGCTGGAGGATGACGTTGCTTCAAATAAAGCCATTGGGTCCTATGGAGCAAATTGTATCTGTGATCAACAAAAATCGTTGGAAAAGTTTTCTGTTCTAACGCATTGCAATACGGGCAGTCTAGCAACAGCTGGATACGGTACTGCCCTTGGTGTAATCCGTGCACTTCACTCTGCCGGTGTGTTAGAACGGGCATACTGTACCGAAACACGACCCTTTAATCAAGGATCTCGACTCACGGCCTATGAATTGGTCCATGAAAAGATACCTTCTACCCTGATAGCAGATTCTGCTGCTGCCGCCTTGATGAAATTCGGAAGGGTGAATGCCGTGGTAGTTGGGGCTGATCGTGTAGCTGCAAATGGTGATACCGCAAATAAGATTGGAACCTATAGCCTTGCATTGTGTGCAATGCATCACAAGATTCCATTCTTTGTGGCTGCACCTTTGACTTCCATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATCGAGGAAAGGTCTCCCAAGGAGTTATTGAACACACGTGGAGGGCTCGGCGAGCAAGTTGCTGCATCTGGCATTGCTGTCTGGAACCCGGCTTTCGATGTTACTCCTGCTCATCTGATCTCTGGAATCATAACAGAAAAGGGAGTCATCACAAAGGTGGGCTCTGAATCTTTCAACATAAAGGAGTTCGTTCAAAAGACCGCGGCGACTCCATAG | 1143 | 47.16 | MALHSNNGGEVGADNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDAADGWNAIRDMVVRGAPAIAIAAALALAAEVCNSNTFNGTSNDAASFIAEKLDYLVSSRPTAVNLADAAIKLKEIVSGAAAISSDAKSVFQAYIEAAEAMLEDDVASNKAIGSYGANCICDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHKIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNTRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKVGSESFNIKEFVQKTAATP | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7855179 | 7860499 | - | Sed0012066.2 | Sed08g0930 | 722706 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g0930 | 380 | FunFam | Methylthioribose-1-phosphate isomerase | 173 | 370 | - | - | |
Sed08g0930 | 380 | Gene3D | - | 208 | 373 | IPR042529 | - | |
Sed08g0930 | 380 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 18 | 361 | IPR005251 | - | |
Sed08g0930 | 380 | PANTHER | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | 14 | 376 | - | GO:0019509(PANTHER)|GO:0046523(PANTHER) | |
Sed08g0930 | 380 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 17 | 361 | IPR037171 | - | |
Sed08g0930 | 380 | Pfam | Initiation factor 2 subunit family | 59 | 360 | IPR000649 | GO:0044237(InterPro) | |
Sed08g0930 | 380 | Gene3D | - | 15 | 207 | IPR027363 | - | |
Sed08g0930 | 380 | NCBIfam | S-methyl-5-thioribose-1-phosphate isomerase | 44 | 361 | IPR011559 | GO:0044249(InterPro) | |
Sed08g0930 | 380 | Hamap | Putative methylthioribose-1-phosphate isomerase [mtnA]. | 17 | 370 | IPR005251 | - | |
Sed08g0930 | 380 | FunFam | Methylthioribose-1-phosphate isomerase | 15 | 207 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0929 | Sed-Chr8:7855179 | Sed08g0930 | Sed-Chr8:7855179 | 1.40E-208 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g0930 | K08963 | - | csv:101210526 | 665.996 |