Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1017 ATGGCCGAGGTCATGAACACCGCCGCCGCCGCCGCCGCCGACGACGACGACGAGTCGTTGGACCGCCGTCGCGATCGCCCAGAGAAGTCGTCAGAGCAACCTTATTCTTCGCCGCCTCCGCAGCCAGTTGCCGCTCCTCCTCCCTCCAGAAGGCGGGATAGAGACGACAGAGATAGGAGAGACGACCGTGATGCCGATCGTCCTCCCAACCGACGCGCCGATAATTACGATCGTAATCGCTCTCCGCCCTTGATGCCTCGGGATAGAGATAGGGATTATAAACGCCGGAGCAGTCTTAGTCCGCCACCGCCTTACAGAGATCGTAGGCATTCACCTCCTAGACGGTCTCCTCCGCCACCGTACAAGCGTTCCAGGAGGGATGACGGCGGGTATGATGGACGAAAGGGAAGCCCTAGAGGAGGTTTCGGGCCTGGCGATAGGAGGTTTGGTTATGATTATGGTGGGGGATATGAGCGGGAAATGCGGGGCCGGCCTGGATATGTTGATGAAAGATCTCTTGGCCGATACAATGGTCGATCATCTGGCGGCTATCAAGATTGGGATTCTAATCGTGGTGGACATGGTGAGGCACTCAGCGCAGGAGCTGGCCAAAGGGAAGGCTTGATGACATACAAGCAATTTATTCAAGAGCTTGAAGATGATATACTGCCTTCTGAAGCTGAACGCAGATACCAAGAATACAAGTCAGAGTACATTACAACTCAGAAACAAGCTTTTTTTGATTCTCATAAAGATGAAGAATGGTTGAGAGACAAATATCATCCTACCAACCTAGTTACTGTCATCGAAAGGAGGAATGAACTTGCACAAAGAACTGCCAAGGATTTTTTGCTTGATCTGCAAAGTGGAACACTCGAGTTAGGTCCTGGGATCAACGCAGCAGCTACAAATAAATCAGGGCAGACTAGTGCACCAAATTCAGACGATGAAGCAGACAATGATGGCAAACGGAGGCGCCATGGTAGAGGACCGGCGAAAGAAATGGATCTTTATTCTTCTGCTCCTAAGGCCCATCCTGTTAGTTCTGAACCAAGACGAATCCAAATTGACATCGAACAAGCTCAAGCTCTTGTGCGTAAACTTGATGCTGAAAAAGGAGTAGTAGAAAATATTTTATCTGGTTCTGATAGTGACAAACTAGGCCGGGATAAAGCACATGGTGGCTCTTCTGGACCAGTCATAATCATACGAGGGTTGACAACTGTCAAAGGCTTGGAGGGTGTTGAGCTACTGGACACGCTTCTCACATATCTTTGGCGCATACATGGCTTAGATTACTATGGAATGGTTGAGACAAGAGAAGCTAAGGGTCTACGTCATGTAAGAGAAGAGGGAAAGAACTCTAACATGGCTGGTGGTGCAGATGAGTGGGAGAAGAAACTTGACTCGCGTTGGCAAGAAAGATTGGGAGGTCAAGATCCGTTGGAGGCAATGACTGCCAAGGATAAAATAGAGGCAGCTGCTTTTGAAGGTTTTGATCCATTTGTTCGTAAGATAAGAGATGAAAAATATGGATGGAAGTACGGCTGTGGAGCCAAGGGTTGCACTAAGCTGTTTCATGCCCCCGAGTTTGTCCATAAACATCTTAACTTAAAACACCCAGAGCTCGTGGTTGACCTGACTACAAAAATGCGCGAAGACCTGTATTTCCAAAATTACATGAATGATGCAGATGCTCCTGGTGGGACGCCTGTTATGCAACAATCACTTCCGAAGGACAAGCCACAGAGACGTAGGATGAATTTAGATGGTCGGCTGAAGGATGATAGAGGCAATCGCAGGGACCGTGATAATTGGGCTAATGGGGGTGACAGATTTGATAGATCTGAGAACCCACAATCAAGTGATTTCCAATCAACTAATGATGATACAGATGGTGGAAATCTTGACGATCCTATGTTTGATACTTTTGGTGGACAAGGCAGACATGTTGCTCCTTTTGCCTCTGAAATGCCACCACCAGTGCTTATGCCCGTTCCTGGTGCTGGCCCGTTAGGACCATTTGTCCCTGCTCCACCTGAAGTTGCAATGAGAATGTTTCGGGAACAAGGAGGTCCACCTCCTTTTGAGGGTGGTGGTAGAAATGGAAGGCCAGGACCTCAATTAGGTGGATCTGCTCCTATCATTGCCCTATCTCCAGGTTTTCGACAGGATCCTCGCCAGATACGGAGCTATCAAGACCTAGACGCACCCGAGGACGAAGTCACTGTAATAGATTATAGAAGCTTGTAG 2253 48.69 MAEVMNTAAAAAADDDDESLDRRRDRPEKSSEQPYSSPPPQPVAAPPPSRRRDRDDRDRRDDRDADRPPNRRADNYDRNRSPPLMPRDRDRDYKRRSSLSPPPPYRDRRHSPPRRSPPPPYKRSRRDDGGYDGRKGSPRGGFGPGDRRFGYDYGGGYEREMRGRPGYVDERSLGRYNGRSSGGYQDWDSNRGGHGEALSAGAGQREGLMTYKQFIQELEDDILPSEAERRYQEYKSEYITTQKQAFFDSHKDEEWLRDKYHPTNLVTVIERRNELAQRTAKDFLLDLQSGTLELGPGINAAATNKSGQTSAPNSDDEADNDGKRRRHGRGPAKEMDLYSSAPKAHPVSSEPRRIQIDIEQAQALVRKLDAEKGVVENILSGSDSDKLGRDKAHGGSSGPVIIIRGLTTVKGLEGVELLDTLLTYLWRIHGLDYYGMVETREAKGLRHVREEGKNSNMAGGADEWEKKLDSRWQERLGGQDPLEAMTAKDKIEAAAFEGFDPFVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVHKHLNLKHPELVVDLTTKMREDLYFQNYMNDADAPGGTPVMQQSLPKDKPQRRRMNLDGRLKDDRGNRRDRDNWANGGDRFDRSENPQSSDFQSTNDDTDGGNLDDPMFDTFGGQGRHVAPFASEMPPPVLMPVPGAGPLGPFVPAPPEVAMRMFREQGGPPPFEGGGRNGRPGPQLGGSAPIIALSPGFRQDPRQIRSYQDLDAPEDEVTVIDYRSL 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10174934 10185012 - Sed0025717.1 Sed08g1017 722793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1017 750 MobiDBLite consensus disorder prediction 301 315 - -
Sed08g1017 750 MobiDBLite consensus disorder prediction 695 714 - -
Sed08g1017 750 MobiDBLite consensus disorder prediction 298 352 - -
Sed08g1017 750 MobiDBLite consensus disorder prediction 562 647 - -
Sed08g1017 750 Pfam Arsenite-resistance protein 2 451 653 IPR007042 -
Sed08g1017 750 ProSitePatterns Zinc finger C2H2 type domain signature. 517 540 IPR013087 -
Sed08g1017 750 MobiDBLite consensus disorder prediction 15 31 - -
Sed08g1017 750 MobiDBLite consensus disorder prediction 48 134 - -
Sed08g1017 750 MobiDBLite consensus disorder prediction 1 199 - -
Sed08g1017 750 Pfam SERRATE/Ars2, N-terminal domain 212 293 IPR021933 -
Sed08g1017 750 PANTHER ARSENITE-RESISTANCE PROTEIN 2 343 746 IPR039727 GO:0006397(InterPro)|GO:0016604(PANTHER)|GO:0031053(PANTHER)
Sed08g1017 750 MobiDBLite consensus disorder prediction 619 633 - -
Sed08g1017 750 MobiDBLite consensus disorder prediction 316 333 - -
Sed08g1017 750 MobiDBLite consensus disorder prediction 33 47 - -
Sed08g1017 750 MobiDBLite consensus disorder prediction 152 169 - -
Sed08g1017 750 MobiDBLite consensus disorder prediction 579 611 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1017 Sed-Chr8:10174934 Sed08g1018 Sed-Chr8:10174934 0.00E+00 tandem
Sed12g1628 Sed-Chr12:27376892 Sed08g1017 Sed-Chr8:10174934 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1017 K27103 - csv:101219335 1136.32