Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1028 | ATGGGGTCGAAGGCGATGACTATGGCATTGGTAGCGGCGGTGGTCGTGGCAGCCGGGTGGTTGTTATGTGGAGTTGAGGGTAGGGCACCAGTATTACATAAGGTTGGAGGAGGAAAATATAGTTGGACAACAAATGTTAACTTCACTAATTGGTCAATTCATGAAGAGTTTTATGTTGGCGATTGGCTTTATTTTGGGTTCGATAAGCATATCTACAACGTGCTCGAAGTGAACAGAACGAGCTACGACAGCTGCAACGACAAGGATTTCATTTTCAACATAACAAAGGGAGGGAGAGATGTGTTCAATCTCACCCAAGCAAAGCCATATTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAGGTTGCTGTTTTTGTTAAAGACTCTCCTCCTCTAACTTCTCCCATTTCACCACCCAAAGTTTTCAATCTTTCTCCATCCATACAACCATTATTATTCCCTCTTTCCCTCTTGCTACTCATCATTGCCTTAACCTAA | 507 | 42.6 | MGSKAMTMALVAAVVVAAGWLLCGVEGRAPVLHKVGGGKYSWTTNVNFTNWSIHEEFYVGDWLYFGFDKHIYNVLEVNRTSYDSCNDKDFIFNITKGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAVFVKDSPPLTSPISPPKVFNLSPSIQPLLFPLSLLLLIIALT | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 11547168 | 11548291 | - | Sed0008099.1 | Sed08g1028 | 722804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1028 | 168 | ProSiteProfiles | Phytocyanin domain profile. | 31 | 131 | IPR003245 | GO:0009055(InterPro) | |
Sed08g1028 | 168 | SUPERFAMILY | Cupredoxins | 32 | 129 | IPR008972 | - | |
Sed08g1028 | 168 | Pfam | Plastocyanin-like domain | 42 | 123 | IPR003245 | GO:0009055(InterPro) | |
Sed08g1028 | 168 | PANTHER | BLUE COPPER PROTEIN | 13 | 130 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) | |
Sed08g1028 | 168 | FunFam | Lamin-like protein | 29 | 132 | - | - | |
Sed08g1028 | 168 | Gene3D | - | 31 | 133 | IPR008972 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3583 | Sed-Chr4:45154809 | Sed08g1028 | Sed-Chr8:11547168 | 3.30E-32 | transposed | |
Sed07g2613 | Sed-Chr7:41640490 | Sed08g1028 | Sed-Chr8:11547168 | 7.60E-27 | transposed | |
Sed12g1622 | Sed-Chr12:27231556 | Sed08g1028 | Sed-Chr8:11547168 | 7.30E-28 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1028 | - | - | - | 0.0 |