Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1028 ATGGGGTCGAAGGCGATGACTATGGCATTGGTAGCGGCGGTGGTCGTGGCAGCCGGGTGGTTGTTATGTGGAGTTGAGGGTAGGGCACCAGTATTACATAAGGTTGGAGGAGGAAAATATAGTTGGACAACAAATGTTAACTTCACTAATTGGTCAATTCATGAAGAGTTTTATGTTGGCGATTGGCTTTATTTTGGGTTCGATAAGCATATCTACAACGTGCTCGAAGTGAACAGAACGAGCTACGACAGCTGCAACGACAAGGATTTCATTTTCAACATAACAAAGGGAGGGAGAGATGTGTTCAATCTCACCCAAGCAAAGCCATATTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAGGTTGCTGTTTTTGTTAAAGACTCTCCTCCTCTAACTTCTCCCATTTCACCACCCAAAGTTTTCAATCTTTCTCCATCCATACAACCATTATTATTCCCTCTTTCCCTCTTGCTACTCATCATTGCCTTAACCTAA 507 42.6 MGSKAMTMALVAAVVVAAGWLLCGVEGRAPVLHKVGGGKYSWTTNVNFTNWSIHEEFYVGDWLYFGFDKHIYNVLEVNRTSYDSCNDKDFIFNITKGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAVFVKDSPPLTSPISPPKVFNLSPSIQPLLFPLSLLLLIIALT 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11547168 11548291 - Sed0008099.1 Sed08g1028 722804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1028 168 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055(InterPro)
Sed08g1028 168 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
Sed08g1028 168 Pfam Plastocyanin-like domain 42 123 IPR003245 GO:0009055(InterPro)
Sed08g1028 168 PANTHER BLUE COPPER PROTEIN 13 130 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Sed08g1028 168 FunFam Lamin-like protein 29 132 - -
Sed08g1028 168 Gene3D - 31 133 IPR008972 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3583 Sed-Chr4:45154809 Sed08g1028 Sed-Chr8:11547168 3.30E-32 transposed
Sed07g2613 Sed-Chr7:41640490 Sed08g1028 Sed-Chr8:11547168 7.60E-27 transposed
Sed12g1622 Sed-Chr12:27231556 Sed08g1028 Sed-Chr8:11547168 7.30E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1028 - - - 0.0