Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1028 ATGGGGTCGAAGGCGATGACTATGGCATTGGTAGCGGCGGTGGTCGTGGCAGCCGGGTGGTTGTTATGTGGAGTTGAGGGTAGGGCACCAGTATTACATAAGGTTGGAGGAGGAAAATATAGTTGGACAACAAATGTTAACTTCACTAATTGGTCAATTCATGAAGAGTTTTATGTTGGCGATTGGCTTTATTTTGGGTTCGATAAGCATATCTACAACGTGCTCGAAGTGAACAGAACGAGCTACGACAGCTGCAACGACAAGGATTTCATTTTCAACATAACAAAGGGAGGGAGAGATGTGTTCAATCTCACCCAAGCAAAGCCATATTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAGGTTGCTGTTTTTGTTAAAGACTCTCCTCCTCTAACTTCTCCCATTTCACCACCCAAAGTTTTCAATCTTTCTCCATCCATACAACCATTATTATTCCCTCTTTCCCTCTTGCTACTCATCATTGCCTTAACCTAA 507 42.6 MGSKAMTMALVAAVVVAAGWLLCGVEGRAPVLHKVGGGKYSWTTNVNFTNWSIHEEFYVGDWLYFGFDKHIYNVLEVNRTSYDSCNDKDFIFNITKGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAVFVKDSPPLTSPISPPKVFNLSPSIQPLLFPLSLLLLIIALT 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11547168 11548291 - Sed0008099.1 Sed08g1028 722804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1028 168 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055(InterPro)
Sed08g1028 168 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
Sed08g1028 168 Pfam Plastocyanin-like domain 42 123 IPR003245 GO:0009055(InterPro)
Sed08g1028 168 PANTHER BLUE COPPER PROTEIN 13 130 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Sed08g1028 168 FunFam Lamin-like protein 29 132 - -
Sed08g1028 168 Gene3D - 31 133 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1028 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3583 Sed-Chr4:45154809 Sed08g1028 Sed-Chr8:11547168 3.30E-32 transposed
Sed07g2613 Sed-Chr7:41640490 Sed08g1028 Sed-Chr8:11547168 7.60E-27 transposed
Sed12g1622 Sed-Chr12:27231556 Sed08g1028 Sed-Chr8:11547168 7.30E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2159 . 12 156 Phytocyanin Superfamily AT1G48940 52.0 1.2e-37 154.1
Sed11g1139 . 11 171 Phytocyanin Superfamily AT2G25060 52.1 8.5e-42 167.9
Sed07g2613 . 28 182 Phytocyanin Superfamily AT5G15350 52.9 3.5e-45 179.1
Sed11g1139 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 1.5e-43 173.7
Sed08g2159 . 20 128 Phytocyanin Superfamily AT3G18590 64.5 1.9e-36 150.2
Sed08g2159 . 20 128 Phytocyanin Superfamily AT3G18590 64.5 1.9e-36 150.2
Sed08g2159 . 12 156 Phytocyanin Superfamily AT1G48940 52.0 1.2e-37 154.1
Sed11g1139 . 10 170 Phytocyanin Superfamily AT5G25090 54.2 1.2e-40 164.1
Sed11g1139 . 11 171 Phytocyanin Superfamily AT2G25060 52.1 8.5e-42 167.9
Sed11g1139 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 1.5e-43 173.7
Sed07g2613 . 28 182 Phytocyanin Superfamily AT5G15350 52.9 3.5e-45 179.1
Sed01g3239 . 9 229 Phytocyanin Superfamily AT1G08500 57.2 3.9e-60 229.2
Sed08g1028 . 32 138 Phytocyanin Superfamily AT2G27035 57.0 3.3e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49