Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1044 ATGAGGCCCGTCAAACGCGAACCCGCAGCCACCATCAGCCGCAGTAATGACCAGAGTTCCGGCGCCAGCGCCGGCGCAGCCGGTGCTGCGAGTTTAAGGGATGTTAAGCGGGAGAGAGTTGCTCGGGAGCGAGAGAACTCCGGCGAGGAAAACGCTGCTGAAGAAGAAGAAGAAGAGGGTCAACAAGAAGACTTGTCGAAACGGCGGTTTCTTCGTTCTCGGTACCTTGCGGTCATTCATGAGATTGGTGAAAGAAGAGAGGATTTGTCTAAGGATTCGGATAAGTTCGATGTTATCTTCAAAGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAATCCAAGGGAACAAATTGCAGATGCAGAAGCTTTGCATGATATTGCAAACTCCCTCATGACCTGTATTAAGTCCCAGTCAAATGATGGCGTTACTCCATCAGATTTTGTGAGTTGTCTGCTCAGAGAGTTTGCCATCGAAGGTGGTGGTATTACATCTGAGGAAAACGATATGGTATCTATCAGTTGGAAAGATATTGGACTAAGTGTTTCGTCTATTTTCAAGAATGGCCATGGATGCTGCACCATGCTTGGACCTATGAGTACTCAGTTGAAGCAGCGAAAGACTAATATTTCCCGGAAACGTTCCAAGCTTCCTGAAAGTTCAAAACCTGCACAGGTTGATGGAAATGGATCTGAAGAAAAAACTGACACAGATAAGAACATGAGGATAATGTTTGGGATTTTGAGGAGGAATAAAGCTGTCAAACTTGAGCATCTGGTATTGAATAGAAAATCTTTTGCACAGACGGTAGAGAACTTATTTGCTCTATCCTTTCTTGCTAAGGATGGTCGGGCTGAGATAACTGTTGACAAAGATGGTTATCATTTTGTATAA 891 44.89 MRPVKREPAATISRSNDQSSGASAGAAGAASLRDVKRERVARERENSGEENAAEEEEEEGQQEDLSKRRFLRSRYLAVIHEIGERREDLSKDSDKFDVIFKEVEKLHEQVQNPREQIADAEALHDIANSLMTCIKSQSNDGVTPSDFVSCLLREFAIEGGGITSEENDMVSISWKDIGLSVSSIFKNGHGCCTMLGPMSTQLKQRKTNISRKRSKLPESSKPAQVDGNGSEEKTDTDKNMRIMFGILRRNKAVKLEHLVLNRKSFAQTVENLFALSFLAKDGRAEITVDKDGYHFV 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12705012 12707839 - Sed0018661.1 Sed08g1044 722820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1044 296 Coils Coil 37 59 - -
Sed08g1044 296 MobiDBLite consensus disorder prediction 1 65 - -
Sed08g1044 296 MobiDBLite consensus disorder prediction 11 25 - -
Sed08g1044 296 MobiDBLite consensus disorder prediction 32 49 - -
Sed08g1044 296 MobiDBLite consensus disorder prediction 207 235 - -
Sed08g1044 296 PANTHER UNCHARACTERIZED 38 296 IPR027786 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Sed08g1044 296 Pfam Nse4 C-terminal 253 293 IPR014854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1044 K22825 - - csv:101220149 394.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1044 Sed-Chr8:12705012 Sed08g1045 Sed-Chr8:12705012 1.70E-145 tandem
Sed12g1604 Sed-Chr12:26860659 Sed08g1044 Sed-Chr8:12705012 1.40E-100 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1604 . 4 401 Non-SMC Element family AT1G51130 52.5 8.0e-101 365.2
Sed08g1044 . 65 295 Non-SMC Element family AT1G51130 59.9 2.6e-67 253.8
Sed08g1045 . 65 295 Non-SMC Element family AT1G51130 59.9 2.6e-67 253.8
Sed12g1604 . 55 381 Non-SMC Element family AT3G20760 51.5 1.5e-85 314.3
Sed08g1044 . 65 296 Non-SMC Element family AT3G20760 54.0 4.1e-62 236.5
Sed08g1045 . 65 296 Non-SMC Element family AT3G20760 54.0 4.1e-62 236.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031559 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 2