Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1044 ATGAGGCCCGTCAAACGCGAACCCGCAGCCACCATCAGCCGCAGTAATGACCAGAGTTCCGGCGCCAGCGCCGGCGCAGCCGGTGCTGCGAGTTTAAGGGATGTTAAGCGGGAGAGAGTTGCTCGGGAGCGAGAGAACTCCGGCGAGGAAAACGCTGCTGAAGAAGAAGAAGAAGAGGGTCAACAAGAAGACTTGTCGAAACGGCGGTTTCTTCGTTCTCGGTACCTTGCGGTCATTCATGAGATTGGTGAAAGAAGAGAGGATTTGTCTAAGGATTCGGATAAGTTCGATGTTATCTTCAAAGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAATCCAAGGGAACAAATTGCAGATGCAGAAGCTTTGCATGATATTGCAAACTCCCTCATGACCTGTATTAAGTCCCAGTCAAATGATGGCGTTACTCCATCAGATTTTGTGAGTTGTCTGCTCAGAGAGTTTGCCATCGAAGGTGGTGGTATTACATCTGAGGAAAACGATATGGTATCTATCAGTTGGAAAGATATTGGACTAAGTGTTTCGTCTATTTTCAAGAATGGCCATGGATGCTGCACCATGCTTGGACCTATGAGTACTCAGTTGAAGCAGCGAAAGACTAATATTTCCCGGAAACGTTCCAAGCTTCCTGAAAGTTCAAAACCTGCACAGGTTGATGGAAATGGATCTGAAGAAAAAACTGACACAGATAAGAACATGAGGATAATGTTTGGGATTTTGAGGAGGAATAAAGCTGTCAAACTTGAGCATCTGGTATTGAATAGAAAATCTTTTGCACAGACGGTAGAGAACTTATTTGCTCTATCCTTTCTTGCTAAGGATGGTCGGGCTGAGATAACTGTTGACAAAGATGGTTATCATTTTGTATAA 891 44.89 MRPVKREPAATISRSNDQSSGASAGAAGAASLRDVKRERVARERENSGEENAAEEEEEEGQQEDLSKRRFLRSRYLAVIHEIGERREDLSKDSDKFDVIFKEVEKLHEQVQNPREQIADAEALHDIANSLMTCIKSQSNDGVTPSDFVSCLLREFAIEGGGITSEENDMVSISWKDIGLSVSSIFKNGHGCCTMLGPMSTQLKQRKTNISRKRSKLPESSKPAQVDGNGSEEKTDTDKNMRIMFGILRRNKAVKLEHLVLNRKSFAQTVENLFALSFLAKDGRAEITVDKDGYHFV 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12705012 12707839 - Sed0018661.1 Sed08g1044 722820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1044 296 Coils Coil 37 59 - -
Sed08g1044 296 MobiDBLite consensus disorder prediction 1 65 - -
Sed08g1044 296 MobiDBLite consensus disorder prediction 11 25 - -
Sed08g1044 296 MobiDBLite consensus disorder prediction 32 49 - -
Sed08g1044 296 MobiDBLite consensus disorder prediction 207 235 - -
Sed08g1044 296 PANTHER UNCHARACTERIZED 38 296 IPR027786 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Sed08g1044 296 Pfam Nse4 C-terminal 253 293 IPR014854 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1044 Sed-Chr8:12705012 Sed08g1045 Sed-Chr8:12705012 1.70E-145 tandem
Sed12g1604 Sed-Chr12:26860659 Sed08g1044 Sed-Chr8:12705012 1.40E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1044 K22825 - csv:101220149 394.815