Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1045 | ATGAGGCCCGTCAAACGCGAACCCGCAGCCACCATCAGCCGCAGTAATGACCAGAGTTCCGGCGCCAGCGCCGGCGCAGCCGGTGCTGCGAGTTTAAGGGATGTTAAGCGGGAGAGAGTTGCTCGGGAGCGAGAGAACTCCGGCGAGGAAAACGCTGCTGAAGAAGAAGAAGAAGAGGGTCAACAAGAAGACTTGTCGAAACGGCGGTTTCTTCGTTCTCGGTACCTTGCGGTCATTCATGAGATTGGTGAAAGAAGAGAGGATTTGTCTAAGGATTCGGATAAGTTCGATGTTATCTTCAAAGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAATCCAAGGGAACAAATTGCAGATGCAGAAGCTTTGCATGATATTGCAAACTCCCTCATGACCTGTATTAAGTCCCAGTCAAATGATGGCGTTACTCCATCAGATTTTGTGAGTTGTCTGCTCAGAGAGTTTGCCATCGAAGGTGGTGGTATTACATCTGAGGAAAACGATATGGTATCTATCAGTTGGAAAGATATTGGACTAAGTGTTTCGTCTATTTTCAAGAATGGCCATGGATGCTGCACCATGCTTGGACCTATGAGTACTCAGTTGAAGCAGCGAAAGACTAATATTTCCCGGAAACGTTCCAAGCTTCCTGAAAGTTCAAAACCTGCACAGGTTGATGGAAATGGATCTGAAGAAAAAACTGACACAGATAAGAACATGAGGATAATGTTTGGGATTTTGAGGAGGAATAAAGCTGTCAAACTTGAGCATCTGGTATTGAATAGAAAATCTTTTGCACAGACGGTAGAGAACTTATTTGCTCTATCCTTTCTTGCTAAGGATGGTCGGGCTGAGATAACTGTTGACAAAGATGGTTATCATTTTGTATGTGAGTAA | 897 | 44.93 | MRPVKREPAATISRSNDQSSGASAGAAGAASLRDVKRERVARERENSGEENAAEEEEEEGQQEDLSKRRFLRSRYLAVIHEIGERREDLSKDSDKFDVIFKEVEKLHEQVQNPREQIADAEALHDIANSLMTCIKSQSNDGVTPSDFVSCLLREFAIEGGGITSEENDMVSISWKDIGLSVSSIFKNGHGCCTMLGPMSTQLKQRKTNISRKRSKLPESSKPAQVDGNGSEEKTDTDKNMRIMFGILRRNKAVKLEHLVLNRKSFAQTVENLFALSFLAKDGRAEITVDKDGYHFVCE | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 12705012 | 12707839 | - | Sed0018661.2 | Sed08g1045 | 722821 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1045 | 298 | Coils | Coil | 37 | 59 | - | - | |
Sed08g1045 | 298 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Sed08g1045 | 298 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
Sed08g1045 | 298 | Pfam | Nse4 C-terminal | 253 | 294 | IPR014854 | - | |
Sed08g1045 | 298 | MobiDBLite | consensus disorder prediction | 32 | 49 | - | - | |
Sed08g1045 | 298 | MobiDBLite | consensus disorder prediction | 203 | 235 | - | - | |
Sed08g1045 | 298 | PANTHER | UNCHARACTERIZED | 38 | 296 | IPR027786 | GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(InterPro)|GO:0030915(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g1045 | Sed-Chr8:12705012 | Sed12g1604 | Sed-Chr12:26860659 | 8.20E-103 | dispersed | |
Sed08g1044 | Sed-Chr8:12705012 | Sed08g1045 | Sed-Chr8:12705012 | 1.70E-145 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1045 | K22825 | - | csv:101220149 | 394.815 |