Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1045 ATGAGGCCCGTCAAACGCGAACCCGCAGCCACCATCAGCCGCAGTAATGACCAGAGTTCCGGCGCCAGCGCCGGCGCAGCCGGTGCTGCGAGTTTAAGGGATGTTAAGCGGGAGAGAGTTGCTCGGGAGCGAGAGAACTCCGGCGAGGAAAACGCTGCTGAAGAAGAAGAAGAAGAGGGTCAACAAGAAGACTTGTCGAAACGGCGGTTTCTTCGTTCTCGGTACCTTGCGGTCATTCATGAGATTGGTGAAAGAAGAGAGGATTTGTCTAAGGATTCGGATAAGTTCGATGTTATCTTCAAAGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAATCCAAGGGAACAAATTGCAGATGCAGAAGCTTTGCATGATATTGCAAACTCCCTCATGACCTGTATTAAGTCCCAGTCAAATGATGGCGTTACTCCATCAGATTTTGTGAGTTGTCTGCTCAGAGAGTTTGCCATCGAAGGTGGTGGTATTACATCTGAGGAAAACGATATGGTATCTATCAGTTGGAAAGATATTGGACTAAGTGTTTCGTCTATTTTCAAGAATGGCCATGGATGCTGCACCATGCTTGGACCTATGAGTACTCAGTTGAAGCAGCGAAAGACTAATATTTCCCGGAAACGTTCCAAGCTTCCTGAAAGTTCAAAACCTGCACAGGTTGATGGAAATGGATCTGAAGAAAAAACTGACACAGATAAGAACATGAGGATAATGTTTGGGATTTTGAGGAGGAATAAAGCTGTCAAACTTGAGCATCTGGTATTGAATAGAAAATCTTTTGCACAGACGGTAGAGAACTTATTTGCTCTATCCTTTCTTGCTAAGGATGGTCGGGCTGAGATAACTGTTGACAAAGATGGTTATCATTTTGTATGTGAGTAA 897 44.93 MRPVKREPAATISRSNDQSSGASAGAAGAASLRDVKRERVARERENSGEENAAEEEEEEGQQEDLSKRRFLRSRYLAVIHEIGERREDLSKDSDKFDVIFKEVEKLHEQVQNPREQIADAEALHDIANSLMTCIKSQSNDGVTPSDFVSCLLREFAIEGGGITSEENDMVSISWKDIGLSVSSIFKNGHGCCTMLGPMSTQLKQRKTNISRKRSKLPESSKPAQVDGNGSEEKTDTDKNMRIMFGILRRNKAVKLEHLVLNRKSFAQTVENLFALSFLAKDGRAEITVDKDGYHFVCE 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12705012 12707839 - Sed0018661.2 Sed08g1045 722821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1045 298 Coils Coil 37 59 - -
Sed08g1045 298 MobiDBLite consensus disorder prediction 1 65 - -
Sed08g1045 298 MobiDBLite consensus disorder prediction 11 25 - -
Sed08g1045 298 Pfam Nse4 C-terminal 253 294 IPR014854 -
Sed08g1045 298 MobiDBLite consensus disorder prediction 32 49 - -
Sed08g1045 298 MobiDBLite consensus disorder prediction 203 235 - -
Sed08g1045 298 PANTHER UNCHARACTERIZED 38 296 IPR027786 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(InterPro)|GO:0030915(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1045 Sed-Chr8:12705012 Sed12g1604 Sed-Chr12:26860659 8.20E-103 dispersed
Sed08g1044 Sed-Chr8:12705012 Sed08g1045 Sed-Chr8:12705012 1.70E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1045 K22825 - csv:101220149 394.815