Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1045 ATGAGGCCCGTCAAACGCGAACCCGCAGCCACCATCAGCCGCAGTAATGACCAGAGTTCCGGCGCCAGCGCCGGCGCAGCCGGTGCTGCGAGTTTAAGGGATGTTAAGCGGGAGAGAGTTGCTCGGGAGCGAGAGAACTCCGGCGAGGAAAACGCTGCTGAAGAAGAAGAAGAAGAGGGTCAACAAGAAGACTTGTCGAAACGGCGGTTTCTTCGTTCTCGGTACCTTGCGGTCATTCATGAGATTGGTGAAAGAAGAGAGGATTTGTCTAAGGATTCGGATAAGTTCGATGTTATCTTCAAAGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAATCCAAGGGAACAAATTGCAGATGCAGAAGCTTTGCATGATATTGCAAACTCCCTCATGACCTGTATTAAGTCCCAGTCAAATGATGGCGTTACTCCATCAGATTTTGTGAGTTGTCTGCTCAGAGAGTTTGCCATCGAAGGTGGTGGTATTACATCTGAGGAAAACGATATGGTATCTATCAGTTGGAAAGATATTGGACTAAGTGTTTCGTCTATTTTCAAGAATGGCCATGGATGCTGCACCATGCTTGGACCTATGAGTACTCAGTTGAAGCAGCGAAAGACTAATATTTCCCGGAAACGTTCCAAGCTTCCTGAAAGTTCAAAACCTGCACAGGTTGATGGAAATGGATCTGAAGAAAAAACTGACACAGATAAGAACATGAGGATAATGTTTGGGATTTTGAGGAGGAATAAAGCTGTCAAACTTGAGCATCTGGTATTGAATAGAAAATCTTTTGCACAGACGGTAGAGAACTTATTTGCTCTATCCTTTCTTGCTAAGGATGGTCGGGCTGAGATAACTGTTGACAAAGATGGTTATCATTTTGTATGTGAGTAA 897 44.93 MRPVKREPAATISRSNDQSSGASAGAAGAASLRDVKRERVARERENSGEENAAEEEEEEGQQEDLSKRRFLRSRYLAVIHEIGERREDLSKDSDKFDVIFKEVEKLHEQVQNPREQIADAEALHDIANSLMTCIKSQSNDGVTPSDFVSCLLREFAIEGGGITSEENDMVSISWKDIGLSVSSIFKNGHGCCTMLGPMSTQLKQRKTNISRKRSKLPESSKPAQVDGNGSEEKTDTDKNMRIMFGILRRNKAVKLEHLVLNRKSFAQTVENLFALSFLAKDGRAEITVDKDGYHFVCE 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12705012 12707839 - Sed0018661.2 Sed08g1045 722821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1045 298 Coils Coil 37 59 - -
Sed08g1045 298 MobiDBLite consensus disorder prediction 1 65 - -
Sed08g1045 298 MobiDBLite consensus disorder prediction 11 25 - -
Sed08g1045 298 Pfam Nse4 C-terminal 253 294 IPR014854 -
Sed08g1045 298 MobiDBLite consensus disorder prediction 32 49 - -
Sed08g1045 298 MobiDBLite consensus disorder prediction 203 235 - -
Sed08g1045 298 PANTHER UNCHARACTERIZED 38 296 IPR027786 GO:0005634(PANTHER)|GO:0005634(InterPro)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0030915(InterPro)|GO:0030915(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1045 K22825 - - csv:101220149 394.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1045 Sed-Chr8:12705012 Sed12g1604 Sed-Chr12:26860659 8.20E-103 dispersed
Sed08g1044 Sed-Chr8:12705012 Sed08g1045 Sed-Chr8:12705012 1.70E-145 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g128 . . . . . Bpe08g01238 . . Cmo10g01012 Cmo11g00835 Cma10g00964 . . . Sed08g1045 . Cpe18g00141 Bhi02g01603 Tan09g0895 Cmetu02g0721 . . . . . . . . . . . . . Cone18ag0124 Cone11ag1467 Lsi06g00472 . . . . . . . . . . . . . . Cma11g00828 . . . . Cpe04g00939 . . . . . . . Cla03g01320 Cam03g1398 Cec03g1430 Cco03g1418 Clacu03g1417 Cmu03g1978 Cre03g1651 . Csa01g03120 Chy02g01406 Cme02g00472
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1604 . 4 401 Non-SMC Element family AT1G51130 52.5 8.0e-101 365.2
Sed08g1044 . 65 295 Non-SMC Element family AT1G51130 59.9 2.6e-67 253.8
Sed08g1045 . 65 295 Non-SMC Element family AT1G51130 59.9 2.6e-67 253.8
Sed12g1604 . 55 381 Non-SMC Element family AT3G20760 51.5 1.5e-85 314.3
Sed08g1044 . 65 296 Non-SMC Element family AT3G20760 54.0 4.1e-62 236.5
Sed08g1045 . 65 296 Non-SMC Element family AT3G20760 54.0 4.1e-62 236.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031559 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 2