Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1058 ATGGAGAATCTTATGATGGTTGATGATTCCTTGGGAGATTGTTCGGATATGGAAGTTGATGATATAAGGTGTGACAATATTGCAGAGAAAGATGTTAGTGATGAAGAAATCGAACCTGAGGATTTGGAGAAGCGTATGTGGAAGGATAGGATCAAGCTTATAAGGATTAAGGAAAGACAGAAGATTGCTGCACAGCAGGCTGAGGAGAAGCAGAAACTGAAGCAGACATCCGACCAGGCTCGAAGAAAAAAGATGTCTAGAGCTCAAGATGGGATTCTCAAGTATATGCTGAAACTGATGGAAGTATGCAAAGCTAGGGGATTTGTATATGGCATTGTACCTGAAAAGGGGAAACCAGTCAGCGGCGCTTCTGATAACCTTCGAGCTTGGTGGAAAGAAAAGGTTAAATTCGATAAGAATGGACCGGCTGCCATAGCCAAGTATGAAGCAGAATGTCTTGCCGAGGAAGAGGCAGATGGAAATGGAAGCGTTAATTCCCATAGCATTCTTCAAGACCTTCAGGATGCGACGCTCGGGTCTCTTTTGTCTTCTTTGATGCAACATTGTGATCCCCCTCAGCGGAAGTTCCCTTTAGAAAAAGGGGTTCCTCCACCCTGGTGGCCCTCCGGAAATGAAGATTGGTGGTCAAAACTTGGGTTATCCCATGGCATCAGTCCTCCTTATAAGAAGCCACATGATTTAAAGAAGATGTGGAAAGTCGGGGTTTTAACAGCCGTGATAAAACATATGTCACCTGATATTGCAAAGATAAGGAGGCACGTACGGCAGTCAAAGTGCTTACAAGACAAGATGACAGCAAAGGAGAGTACGATTTGGTTGGGAGTTTTAAGCCGAGAGGAATCTCTAATTCGACAACCGAGCAGTGATAATGGAGCATCTGGAATAACAGAGACACCAGGAGGAAGTCATGGTGAAAAGCAGGCTGCAGTAAGCAGTGACAGCGACTATGATGTTGATCTTGCTGATGATGGTGTTGGGTCAGTTTCTTCTAAAGACGACAGGAGAAATCAATCTGTAGATGCAGAACCATCCAATAATCTATGCAATGATGCTCCTCAACCTGCTGAAGGAAAGGAGCAAGGTGAAAAGCATATGAGAAAAAGACGTCGTGGTGGCAGGACAAAACATGCCGATCAAACACTGGCTCCATCTCGGAATGAGGAACCAAGCACGAAGGAGCAAGATGAAAAGCATAGAAGAAAAACACATCGGGGTGGCAGGATGAAAGATGCCGATCCAACACTGGCTCCATCTCGGAATGAAGAAGAACAAATGGCTCCAAGAAATGTTCATCTAGATATGAACCATTCTGATGTACCATTAGATAGATTCGAAATTCCAGGTAACCAACTGCAAAATGATACTGTTAGGCCACTGGATATGGATGTTCGATCAGAAGTACCAGCTCCCCAGTTCAACATGTTCTCCGCGACGCCCTCGGATAATATCAACCTAATGTCCACTCAGAGCATGTACGTTGATGGAAGGCCTCTGTTGTATCCTGCAATGCAGAATGCTGAGGTGCAACCTGAAAGTGCTTACAATATTTATGTTCCACAAGCGGAATATAGATCCATTTATGATGTGCAGAAATTGGAGGAAGGAGCGCATACACAACATAGAAATGATGAGACTATAGGAGGAGATTTCAACTATGTAAAAGAAGTGTTCAACACCGACCAAGATAGGCCTGTCGATACACAGTTTGGATCACCAATCAACAGTCTCTCATTAGATTTTGGAGCATTTAATAGCAGTCCATTCCATCTTGGAATCGACGGTGCAAGCTCGTTCGATGACTTTTTGGTTGATGACGATTTGATCCAATACTTCGGAGCTTAG 1863 44.02 MENLMMVDDSLGDCSDMEVDDIRCDNIAEKDVSDEEIEPEDLEKRMWKDRIKLIRIKERQKIAAQQAEEKQKLKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIVPEKGKPVSGASDNLRAWWKEKVKFDKNGPAAIAKYEAECLAEEEADGNGSVNSHSILQDLQDATLGSLLSSLMQHCDPPQRKFPLEKGVPPPWWPSGNEDWWSKLGLSHGISPPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVRQSKCLQDKMTAKESTIWLGVLSREESLIRQPSSDNGASGITETPGGSHGEKQAAVSSDSDYDVDLADDGVGSVSSKDDRRNQSVDAEPSNNLCNDAPQPAEGKEQGEKHMRKRRRGGRTKHADQTLAPSRNEEPSTKEQDEKHRRKTHRGGRMKDADPTLAPSRNEEEQMAPRNVHLDMNHSDVPLDRFEIPGNQLQNDTVRPLDMDVRSEVPAPQFNMFSATPSDNINLMSTQSMYVDGRPLLYPAMQNAEVQPESAYNIYVPQAEYRSIYDVQKLEEGAHTQHRNDETIGGDFNYVKEVFNTDQDRPVDTQFGSPINSLSLDFGAFNSSPFHLGIDGASSFDDFLVDDDLIQYFGA 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14153488 14156779 - Sed0012160.1 Sed08g1058 722834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1058 620 MobiDBLite consensus disorder prediction 289 431 - -
Sed08g1058 620 FunFam Ethylene insensitive 3-like 1 74 152 - -
Sed08g1058 620 Pfam Ethylene insensitive 3, DNA-binding domain 40 287 IPR047091 GO:0003700(InterPro)
Sed08g1058 620 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 582 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed08g1058 620 MobiDBLite consensus disorder prediction 289 304 - -
Sed08g1058 620 SUPERFAMILY DNA-binding domain of EIN3-like 168 290 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed08g1058 620 Gene3D - 74 150 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed08g1058 620 Gene3D - 160 298 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed08g1058 620 FunFam Ethylene insensitive 3-like 1 161 297 - -
Sed08g1058 620 MobiDBLite consensus disorder prediction 395 424 - -
Sed08g1058 620 Coils Coil 56 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1058 Sed-Chr8:14153488 Sed11g1403 Sed-Chr11:29994556 6.30E-97 dispersed
Sed08g1058 Sed-Chr8:14153488 Sed08g1059 Sed-Chr8:14153924 0.00E+00 tandem
Sed12g1593 Sed-Chr12:26087537 Sed08g1058 Sed-Chr8:14153488 1.40E-239 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39326 PF04873 EIN3 3.20E-126 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1058 K14514 - csv:101210347 922.924