Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1127 ATGTGGCCCTCCGGTTCCTCCAGGCCCATCGCCGATGGGTATGGCCATACGGCAGCGCCAACGGCGGACATGGTGGGTTTCATGGCTTCTGGATACGGCGTCGGTGTCAGCGTATTGCCTCTCCTTACCGGGCTCGCGCCATCGAGCGTCGGAGTCCAAGAGGGTAATTGGATGATCAGCCGCAACGGCGGCGGCGGTGGAGGTGGTGGTGGTGGTGGTGGAGTTCAATTTCAAGGGAACAATTTTGATGGGTTTGGGTTTTTGGGAAGTGGGTCGGGTTTGAATTCGGGCGCCGGGACTTGCCATGACTGTGGGAACCAAGCTAAGAAAGATTGCAACCACCGCCGGTGCCGGAGCTGCTGTAAAAGCCGGGGCTTTGACTGTCCTACTCACGTGAAGAGCACGTGGGTTCCTGCGGCACGGCGGAGAGAGCGCCAGATGCTGAGTGCCACCGCAGACGCCGCCGGGACTTCGTCGGGCTCCACCTCCGGCGGGAAGAAGGCGAGGCTTATTCCGTCGACCCAGACAACTACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTCTTCAGCTGCCGATCTGAGTTATAAAAAAGCAAAGAAGCTACCCGAACAAGTACGAGCACCAGCAGTGTTCAAGTGTGTCCGGGTGACCGCAGTGGAGGGCGGCAGTGGCAGTGGCGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTTTTCAAAGGTTATTTATACGACCATGGAGTGGAAGCTAGAGATGGCTTTCCAATGTTTTCGGACTTGCATCTCGGCGGTGGCGGGGATGGCGGTTCGACATCGTCACCGATCATTGATCCTGTCGACGTTTATGGAAGCTCCACTGCTCGGGGCGGAGGACTGGCTGGGGGCTCCAACTATGGTAATCCGATAAATTGA 945 56.93 MWPSGSSRPIADGYGHTAAPTADMVGFMASGYGVGVSVLPLLTGLAPSSVGVQEGNWMISRNGGGGGGGGGGGGVQFQGNNFDGFGFLGSGSGLNSGAGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCPTHVKSTWVPAARRRERQMLSATADAAGTSSGSTSGGKKARLIPSTQTTTNSHTSTSNTPTRSFDTSSAADLSYKKAKKLPEQVRAPAVFKCVRVTAVEGGSGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMFSDLHLGGGGDGGSTSSPIIDPVDVYGSSTARGGGLAGGSNYGNPIN 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21766981 21769776 + Sed0027776.1 Sed08g1127 722903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1127 314 MobiDBLite consensus disorder prediction 147 196 - -
Sed08g1127 314 MobiDBLite consensus disorder prediction 151 196 - -
Sed08g1127 314 NCBIfam putative zinc finger domain, LRP1 type 100 142 IPR006510 -
Sed08g1127 314 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 76 295 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Sed08g1127 314 Pfam Domain of unknown function (DUF702) 100 260 - -
Sed08g1127 314 NCBIfam LRP1 C-terminal domain 208 259 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1175 Sed-Chr5:15775658 Sed08g1127 Sed-Chr8:21766981 2.90E-61 dispersed
Sed05g1176 Sed-Chr5:15775658 Sed08g1127 Sed-Chr8:21766981 4.90E-61 dispersed
Sed07g2310 Sed-Chr7:38959439 Sed08g1127 Sed-Chr8:21766981 1.10E-40 dispersed
Sed08g1127 Sed-Chr8:21766981 Sed14g1169 Sed-Chr14:21046792 8.50E-34 dispersed
Sed08g1127 Sed-Chr8:21766981 Sed01g3257 Sed-Chr1:60588573 6.10E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39329 PF05142 DUF702 1.50E-56 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1127 K27807 - csv:101217349 430.254