Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1127 | ATGTGGCCCTCCGGTTCCTCCAGGCCCATCGCCGATGGGTATGGCCATACGGCAGCGCCAACGGCGGACATGGTGGGTTTCATGGCTTCTGGATACGGCGTCGGTGTCAGCGTATTGCCTCTCCTTACCGGGCTCGCGCCATCGAGCGTCGGAGTCCAAGAGGGTAATTGGATGATCAGCCGCAACGGCGGCGGCGGTGGAGGTGGTGGTGGTGGTGGTGGAGTTCAATTTCAAGGGAACAATTTTGATGGGTTTGGGTTTTTGGGAAGTGGGTCGGGTTTGAATTCGGGCGCCGGGACTTGCCATGACTGTGGGAACCAAGCTAAGAAAGATTGCAACCACCGCCGGTGCCGGAGCTGCTGTAAAAGCCGGGGCTTTGACTGTCCTACTCACGTGAAGAGCACGTGGGTTCCTGCGGCACGGCGGAGAGAGCGCCAGATGCTGAGTGCCACCGCAGACGCCGCCGGGACTTCGTCGGGCTCCACCTCCGGCGGGAAGAAGGCGAGGCTTATTCCGTCGACCCAGACAACTACCAATTCTCACACTTCCACTTCCAATACTCCAACACGAAGCTTCGACACTTCTTCAGCTGCCGATCTGAGTTATAAAAAAGCAAAGAAGCTACCCGAACAAGTACGAGCACCAGCAGTGTTCAAGTGTGTCCGGGTGACCGCAGTGGAGGGCGGCAGTGGCAGTGGCGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTTTTCAAAGGTTATTTATACGACCATGGAGTGGAAGCTAGAGATGGCTTTCCAATGTTTTCGGACTTGCATCTCGGCGGTGGCGGGGATGGCGGTTCGACATCGTCACCGATCATTGATCCTGTCGACGTTTATGGAAGCTCCACTGCTCGGGGCGGAGGACTGGCTGGGGGCTCCAACTATGGTAATCCGATAAATTGA | 945 | 56.93 | MWPSGSSRPIADGYGHTAAPTADMVGFMASGYGVGVSVLPLLTGLAPSSVGVQEGNWMISRNGGGGGGGGGGGGVQFQGNNFDGFGFLGSGSGLNSGAGTCHDCGNQAKKDCNHRRCRSCCKSRGFDCPTHVKSTWVPAARRRERQMLSATADAAGTSSGSTSGGKKARLIPSTQTTTNSHTSTSNTPTRSFDTSSAADLSYKKAKKLPEQVRAPAVFKCVRVTAVEGGSGSGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMFSDLHLGGGGDGGSTSSPIIDPVDVYGSSTARGGGLAGGSNYGNPIN | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21766981 | 21769776 | + | Sed0027776.1 | Sed08g1127 | 722903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1127 | 314 | MobiDBLite | consensus disorder prediction | 147 | 196 | - | - | |
Sed08g1127 | 314 | MobiDBLite | consensus disorder prediction | 151 | 196 | - | - | |
Sed08g1127 | 314 | NCBIfam | putative zinc finger domain, LRP1 type | 100 | 142 | IPR006510 | - | |
Sed08g1127 | 314 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 76 | 295 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Sed08g1127 | 314 | Pfam | Domain of unknown function (DUF702) | 100 | 260 | - | - | |
Sed08g1127 | 314 | NCBIfam | LRP1 C-terminal domain | 208 | 259 | IPR006511 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1175 | Sed-Chr5:15775658 | Sed08g1127 | Sed-Chr8:21766981 | 2.90E-61 | dispersed | |
Sed05g1176 | Sed-Chr5:15775658 | Sed08g1127 | Sed-Chr8:21766981 | 4.90E-61 | dispersed | |
Sed07g2310 | Sed-Chr7:38959439 | Sed08g1127 | Sed-Chr8:21766981 | 1.10E-40 | dispersed | |
Sed08g1127 | Sed-Chr8:21766981 | Sed14g1169 | Sed-Chr14:21046792 | 8.50E-34 | dispersed | |
Sed08g1127 | Sed-Chr8:21766981 | Sed01g3257 | Sed-Chr1:60588573 | 6.10E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39329 | PF05142 | DUF702 | 1.50E-56 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1127 | K27807 | - | csv:101217349 | 430.254 |