Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1153 ATGGCCACTCAGGCACTTATTTCTTCTTCGTTAACCTCATCCATAGGCGCAGCCACACACAGATTAGGACCAAAACCATCAAGAAAAGCATCTTCTTTTGTTGTTAGAGCTGAAGCCACTCCTCCTGTCAAGCAAGGGGCAGATAGACAATTATGGTTTGCTTCGAAACAGAGTCTCTCTTACTTGGATGGAAGTCTCCCAGGCGATTATGGATTCGACCCGCTGGGACTATCAGACCCCGAGGGCACGGGAGGGTTCATCGAGCCGAAATGGTTGGCGTACGGCGAGGTGATCAATGGGAGGTATGCCATGATGGGAGTAGTAGGAGCCATTGCCCCAGAGATCCTTGGATCATTGGGGCTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAGACAGGGGTCATCCCACCAGCAGGGACCTACAACTACTGGGCAGACCCCTACACACTGTTTGTGTTTGAAATGGCTCTTATGGGGTTTGCAGAGCACAGAAGATTTCAAGACTGGGCCAATCCAGGGTCCATGGGGAAGCAGTACTTTTTGGGGCTGGAGAAGTTTTTGGGTGGTTCGGGTGACCCGGCATACCCGGGTGGGCCCTTGTTCAATCCTCTAGGGTTTGGAAAAGATGAGAAGTCATTGAAGGAATTGAAGCTGAAGGAAGTGAAGAATGGAAGGCTTGCAATGTTGGCAATCTTGGGTTTCTTCATACAAGGTCTTGTGACTGGTGTTGGACCTTACCAAAACCTTTTGGATCATTTGTCTGATCCTGTCAACAACAACGTTTTGACCAGTCTTAAGTTTCACTAG 810 49.38 MATQALISSSLTSSIGAATHRLGPKPSRKASSFVVRAEATPPVKQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMMGVVGAIAPEILGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22676092 22677376 - Sed0000961.1 Sed08g1153 722929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1153 269 FunFam Chlorophyll a-b binding protein, chloroplastic 50 268 - -
Sed08g1153 269 SUPERFAMILY Chlorophyll a-b binding protein 48 265 - -
Sed08g1153 269 Pfam Chlorophyll A-B binding protein 60 239 IPR022796 -
Sed08g1153 269 Gene3D Chlorophyll a/b binding protein domain 50 268 - -
Sed08g1153 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 5 264 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1153 Sed-Chr8:22676092 Sed11g0951 Sed-Chr11:23937939 7.80E-44 dispersed
Sed08g1153 Sed-Chr8:22676092 Sed08g1156 Sed-Chr8:22736962 4.40E-156 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1153 K08909 - csv:101202993 501.13