Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1170 ATGGGCATTTCAGGAAAATGGTTCAAAGCGTTGGTTGGTTCCAAGAAATCAGAAAAATCTCAGTCATCAGAACAAGATGAAAATACGAGGACAGGTACTAACAAGTTTTGGCATCGGAGAAAGAACTCGGTAGATATTGATGCTGATAAACTTCAGCATGAGTTCAATTCGAATTTTGCCTCATTTGTTGAGGAGTCCAATGCCCTTTCAGATCCAGAAGCTGCTTCTAATCCTTCTGATTCAGTTCAAAAATGTGACGCATTTCATATTCGACAAAATGATACAGAAGAACGGGCTGCTATATGCATCCAAACAATGTTTCGAGGATTTTTGGCTAGAAGAGCTCTTCGTGCTCTGAAGGGACTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTTAGAAAACAAGCTGCAATAACTCTTCGATGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAAATGCACAGAAAAAAACTCAACAACAACTTGAAAACCAAGCTCGTGTCCGCGAAATTGAAGAAGGTTGGTGCGACATTGTTGGATCTGTTGAAGAAATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAGGCAGGATCAAAACAGCAGGCTGCCTTCTCTCAATTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGATATTAATCTGAGAGATGGAGTGATGATTTGCGAGAATGGATCAGCTGAGGGAAAAACCAATTCGAAATCGCATTCAAAAACTACTGGAAAGAAAACGAACTTTGTGACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACAGTCTGATGGATATGGTTCATCATCCCCCACTAAGTCACCTGGCATTGTAGAGGTATCCAGTGCACAGATTCAAAAGCCCAAGCATAAACTAGGACCTGAGAGGCCATTTGAAGAAGTCAAACCTAAAGTAGATACTGGTTTGAGATCCCATAGCAATCCAAAAGAGAGATTCACACCATTGACCAAAAATGCAAAGAAGCGATTATCCATGCCTACCAATGTTGCAGATCCTGGTAGTCAAAACCGAACAGTGAGAAATTCCAGCAGAACAACTGGCAAAGCTGTCGTGACCATGTCCACCAACGACAAACCGAAGTTGATTACAAGAGGTGACTCAAAATCTGCAAAACCCAGATCGCCGAATTGA 1314 43.07 MGISGKWFKALVGSKKSEKSQSSEQDENTRTGTNKFWHRRKNSVDIDADKLQHEFNSNFASFVEESNALSDPEAASNPSDSVQKCDAFHIRQNDTEERAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESENAQKKTQQQLENQARVREIEEGWCDIVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSKQQAAFSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMICENGSAEGKTNSKSHSKTTGKKTNFVTDQSNLSSQKTAASQSDGYGSSSPTKSPGIVEVSSAQIQKPKHKLGPERPFEEVKPKVDTGLRSHSNPKERFTPLTKNAKKRLSMPTNVADPGSQNRTVRNSSRTTGKAVVTMSTNDKPKLITRGDSKSAKPRSPN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24136134 24143806 - Sed0000943.1 Sed08g1170 722946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1170 437 ProSiteProfiles IQ motif profile. 145 173 - -
Sed08g1170 437 MobiDBLite consensus disorder prediction 1 36 - -
Sed08g1170 437 Gene3D - 95 138 - -
Sed08g1170 437 PANTHER IQ-DOMAIN 5-RELATED 5 395 - -
Sed08g1170 437 MobiDBLite consensus disorder prediction 280 335 - -
Sed08g1170 437 MobiDBLite consensus disorder prediction 19 36 - -
Sed08g1170 437 SMART iq_5 95 117 IPR000048 GO:0005515(InterPro)
Sed08g1170 437 SMART iq_5 118 139 IPR000048 GO:0005515(InterPro)
Sed08g1170 437 Pfam IQ calmodulin-binding motif 97 117 IPR000048 GO:0005515(InterPro)
Sed08g1170 437 ProSiteProfiles IQ motif profile. 96 124 - -
Sed08g1170 437 MobiDBLite consensus disorder prediction 280 437 - -
Sed08g1170 437 MobiDBLite consensus disorder prediction 381 421 - -
Sed08g1170 437 MobiDBLite consensus disorder prediction 343 367 - -
Sed08g1170 437 ProSiteProfiles IQ motif profile. 120 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1170 Sed-Chr8:24136134 Sed11g1830 Sed-Chr11:33109301 3.90E-37 dispersed
Sed08g1170 Sed-Chr8:24136134 Sed08g1171 Sed-Chr8:24136134 2.20E-229 tandem
Sed12g1498 Sed-Chr12:20358581 Sed08g1170 Sed-Chr8:24136134 8.10E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1170 - - - 0.0