Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1171 ATGGGCATTTCAGGAAAATGGTTCAAAGCGTTGGTTGGTTCCAAGAAATCAGAAAAATCTCAGTCATCAGAACAAGATGAAAATACGAGGACAGGTACTAACAAGTTTTGGCATCGGAGAAAGAACTCGGTAGATATTGATGCTGATAAACTTCAGCATGAGTTCAATTCGAATTTTGCCTCATTTGTTGAGGAGTCCAATGCCCTTTCAGATCCAGAAGCTGCTTCTAATCCTTCTGATTCAGTTCAAAAATGTGACGCATTTCATATTCGACAAAATGATACAGAAGAACGGGCTGCTATATGCATCCAAACAATGTTTCGAGGATTTTTGGCTAGAAGAGCTCTTCGTGCTCTGAAGGGACTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTTAGAAAACAAGCTGCAATAACTCTTCGATGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAAATGCACAGAAAAAAACTCAACAACAACTTGAAAACCAAGCTCGTGTCCGCGAAATTGAAGAAGGTTGGTGCGACATTGTTGGATCTGTTGAAGAAATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAGGCAGGATCAAAACAGCAGGCTGCCTTCTCTCAATTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGATATTAATCTGAGAGATGGAGTGATGATTTGCGAGAATGGATCAGCTGAGGGAAAAACCAATTCGAAATCGCATTCAAAAACTACTGGAAAGAAAACGAACTTTGTGACTGATCAATCAAACCTCTCAAGCCAAAAAACTGCTGCCTCACAGTCTGATGGATATGGTTCATCATCCCCCACTAAGTCACCTGGCATTGTAGAGGTATCCAGTGCACAGATTCAAAAGCCCAAGCATAAACTAGGACCTGAGAGGCCATTTGAAGAAGTCAAACCTAAAGTAGATACTGGTTTGAGATCCCATAGCAATCCAAAAGAGAGATTCACACCATTGACCAAAAATGCAAAGAAGCGATTATCCATGCCTACCAATGTTGCAGATCCTGGTAGTCAAAACCGAACAGTGAGAAATTCCAGCAGAACAACTGGCAAAGCTGTCGTGACCATGTCCACCAACGACAAACCGAAGTTGATTACAAGAGGTGACTCAAAATCTGCAAAACCCAGATCGCCGAATTGA 1314 43.07 MGISGKWFKALVGSKKSEKSQSSEQDENTRTGTNKFWHRRKNSVDIDADKLQHEFNSNFASFVEESNALSDPEAASNPSDSVQKCDAFHIRQNDTEERAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESENAQKKTQQQLENQARVREIEEGWCDIVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGSKQQAAFSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMICENGSAEGKTNSKSHSKTTGKKTNFVTDQSNLSSQKTAASQSDGYGSSSPTKSPGIVEVSSAQIQKPKHKLGPERPFEEVKPKVDTGLRSHSNPKERFTPLTKNAKKRLSMPTNVADPGSQNRTVRNSSRTTGKAVVTMSTNDKPKLITRGDSKSAKPRSPN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24136134 24143528 - Sed0000943.2 Sed08g1171 722947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1171 437 ProSiteProfiles IQ motif profile. 145 173 - -
Sed08g1171 437 MobiDBLite consensus disorder prediction 1 36 - -
Sed08g1171 437 Gene3D - 95 138 - -
Sed08g1171 437 PANTHER IQ-DOMAIN 5-RELATED 5 395 - -
Sed08g1171 437 MobiDBLite consensus disorder prediction 280 335 - -
Sed08g1171 437 MobiDBLite consensus disorder prediction 19 36 - -
Sed08g1171 437 SMART iq_5 95 117 IPR000048 GO:0005515(InterPro)
Sed08g1171 437 SMART iq_5 118 139 IPR000048 GO:0005515(InterPro)
Sed08g1171 437 Pfam IQ calmodulin-binding motif 97 117 IPR000048 GO:0005515(InterPro)
Sed08g1171 437 ProSiteProfiles IQ motif profile. 96 124 - -
Sed08g1171 437 MobiDBLite consensus disorder prediction 280 437 - -
Sed08g1171 437 MobiDBLite consensus disorder prediction 381 421 - -
Sed08g1171 437 MobiDBLite consensus disorder prediction 343 367 - -
Sed08g1171 437 ProSiteProfiles IQ motif profile. 120 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1171 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1171 Sed-Chr8:24136134 Sed12g1498 Sed-Chr12:20358581 2.40E-180 dispersed
Sed08g1170 Sed-Chr8:24136134 Sed08g1171 Sed-Chr8:24136134 2.20E-229 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2817 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed01g2818 . 1 472 IQD Protein Family AT3G52290 53.3 1.4e-100 364.4
Sed03g0040 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0042 . 1 451 IQD Protein Family AT3G52290 53.1 5.7e-89 325.9
Sed03g0041 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed03g0043 . 2 172 IQD Protein Family AT2G26410 57.6 1.2e-40 165.6
Sed07g2286 . 84 258 IQD Protein Family AT2G26410 50.6 1.9e-38 158.3
Sed08g1171 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed08g1170 . 1 407 IQD Protein Family AT3G22190 55.5 1.1e-92 338.2
Sed12g1498 . 1 398 IQD Protein Family AT3G22190 56.3 4.7e-88 322.8
Sed13g1870 . 1 437 IQD Protein Family AT2G26180 61.0 3.3e-118 422.9
Sed13g1871 . 11 425 IQD Protein Family AT2G26180 61.4 1.1e-110 397.9
Sed11g1830 . 1 435 IQD Protein Family AT2G26180 55.2 7.0e-100 362.1
Sed10g0264 . 1 271 IQD Protein Family AT2G33990 52.3 3.5e-65 246.1
Sed14g1502 . 1 281 IQD Protein Family AT2G33990 51.2 1.5e-63 240.7
Sed14g1502 . 1 237 IQD Protein Family AT3G15050 52.3 1.4e-58 224.2
Sed04g1560 . 43 216 IQD Protein Family AT3G15050 62.7 8.0e-54 208.4
Sed09g0603 . 1 499 IQD Protein Family AT4G00820 51.5 9.8e-115 411.8
Sed09g0603 . 1 499 IQD Protein Family AT1G01110 50.5 7.7e-112 402.1
Sed09g1621 . 1 396 IQD Protein Family AT3G16490 52.7 9.5e-75 278.5
Sed07g1415 . 1 393 IQD Protein Family AT3G16490 51.4 1.0e-68 258.5
Sed08g0818 . 1 356 IQD Protein Family AT3G16490 52.6 6.8e-65 245.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42