Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1181 ATGGAGCATTTACTCATCTCACTCCTTGTCCTCTTCCTCTCCTTCCTCTCCATCACTCTGTTCGTCCTGTTCTACAAGCACAAGTCGTTATTCTCGTATCCCAACGTCCCTCCCGGCACCATCGGCATTCCCATCCTGGGCGAGAGCCTGGAGTTCCTATCCACGGGCTGGAAAGGCGAGCCCGAGAAGTTCATCTTCGACCGCATCACCAAGTTCAAGTCCGAAATCTTCAAGACCTCCATCGTGGGGGTTCCGGCGGCTGTGTTGTGCGGCCCTGTGTGCAACAAGTTCCTCTTCTCCAACGAGGACAAACTCGTCACCGCCTGGTGGCCGGACTCCGTCAACAAGATCTTCCCCTCCTCCACCCAGACCAACTCCAAAGAAGAGGCTAAGAAACTCAAGAAACTCCTCCCCCAGTTCCTTAAGCCCGAAGCCCTTCAGCGGTATATCGGAATCATGGACCAACTCGCTCAACGCCATTTCGCTCACTCCTGGGAGAATAGAGAAGAGGTCCTCATGTTTCCTCTCGCCAAAACCTTCACCTTCGCGCTTGCGTGCCGCCTGTTCGTGAGCGTCGAGGATCCAGCGCACGTGGAGAGGCTATCAGGACCGTTCCAGCACATTGCAGCAGGAATCATTTCCATGCCCATCAATCTACCCGGAACGCCCTTCAACCGTGCGATTAAGGCCTCCAACTTCATCAGAAAGGAGCTGCTGAAGATCGTGCGGCAGAGGAACGCGGATCTGGCCGAAGGAAAGGCCTCTCCCACGCAGGACATTCTGTCGCACATGCTTCTCACCTGCGATGAAAGCGGGCACCACATGAAGGAGTCCGACATCGCCGATAAGATCCTCGGGTTGCTGATCGGAGGCCATGACACTGCCAGTGCCGCCTGTACCTTCATCGCCAAGTTCCTCGCTGAGCTTCCTCACATCTACGATGGCGTCTACAAAGAGCAAATGGAAATAGCAAAGGCAAAAGCCCCAGGGGAGCTATTGAACTGGGAAGACATTCAGAAGATGAAATATTCATGGAATGTGGCCTGTGAGGTTCTAAGACTTGCTTCCCCACTCCAAGGTGCCTTTAGAGAAGCCTTAACCGATTTCGTCTTTAATGGCTTCTACATTCCCAAGGGCTGGAAGTTATATTGGAGCTCAAACTCAACACACAAAAACGGGGAGTTCTTCCCAGAGCCATACAAATTTGACCCGTCGAGATTCGAAGGGAAGGGGCCAGCGCCGTATACATTCGTGCCGTTCGGGGGCGGGCCAAGAATGTGCCCCGGAAAAGAGTACGCGAGGCTGGAGATTCTGGTTTTCATCCACAATTTGGTGAAGAGATTCAAATGGGAAAAGCTTCTTGAGAAAGAGATGATCGTTTGCGATCCAATGCCAATCCCTCAAAAAGGTCTCCCCATTCGCCTTTTTCCCCATAAATCTCCCTCATCTGTTTAA 1455 52.71 MEHLLISLLVLFLSFLSITLFVLFYKHKSLFSYPNVPPGTIGIPILGESLEFLSTGWKGEPEKFIFDRITKFKSEIFKTSIVGVPAAVLCGPVCNKFLFSNEDKLVTAWWPDSVNKIFPSSTQTNSKEEAKKLKKLLPQFLKPEALQRYIGIMDQLAQRHFAHSWENREEVLMFPLAKTFTFALACRLFVSVEDPAHVERLSGPFQHIAAGIISMPINLPGTPFNRAIKASNFIRKELLKIVRQRNADLAEGKASPTQDILSHMLLTCDESGHHMKESDIADKILGLLIGGHDTASAACTFIAKFLAELPHIYDGVYKEQMEIAKAKAPGELLNWEDIQKMKYSWNVACEVLRLASPLQGAFREALTDFVFNGFYIPKGWKLYWSSNSTHKNGEFFPEPYKFDPSRFEGKGPAPYTFVPFGGGPRMCPGKEYARLEILVFIHNLVKRFKWEKLLEKEMIVCDPMPIPQKGLPIRLFPHKSPSSV 484
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 24461141 24465427 + Sed0025357.1 Sed08g1181 722957
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1181 484 Gene3D Cytochrome P450 27 477 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed08g1181 484 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 420 429 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed08g1181 484 PANTHER CYTOCHROME P450 26 35 458 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Sed08g1181 484 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed08g1181 484 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed08g1181 484 PRINTS E-class P450 group I signature 417 427 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed08g1181 484 PRINTS E-class P450 group I signature 427 450 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed08g1181 484 FunFam Taxadiene 5-alpha hydroxylase 27 478 - -
Sed08g1181 484 CDD CYP90-like 68 477 - -
Sed08g1181 484 Pfam Cytochrome P450 37 460 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed08g1181 484 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed08g1181 484 PRINTS P450 superfamily signature 418 427 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed08g1181 484 PRINTS P450 superfamily signature 427 438 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed08g1181 484 SUPERFAMILY Cytochrome P450 30 477 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1879 Sed-Chr5:32195073 Sed08g1181 Sed-Chr8:24461141 2.20E-76 dispersed
Sed07g2699 Sed-Chr7:42282257 Sed08g1181 Sed-Chr8:24461141 2.00E-83 dispersed
Sed08g0425 Sed-Chr8:2604308 Sed08g1181 Sed-Chr8:24461141 5.10E-182 dispersed
Sed08g1181 Sed-Chr8:24461141 Sed13g1742 Sed-Chr13:22400999 1.50E-66 dispersed
Sed08g1181 Sed-Chr8:24461141 Sed04g3201 Sed-Chr4:42674509 8.90E-99 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1181 K20667 - csv:101206033 813.913