Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1182 ATGGAACGCACCGACGAGGACCAGGATCGAATCCTTCCTATAGGAGAAAGATCTCTTAGGTCAGATAACCTGAAAGACTCGCAACTCTCGCCTGAAGGTGGAAGGATTACTTCAACGAACCCTTCTCCAAATGCAGTAATTGGGCCGTCAAGGGATTCAATAGAGCAGAAAGTATCTATGGATGCAGGAACAAGTATTAGCCATGCTCATCCGGTGAATGCATATGGTTCACATGAGCCAAATATACAATATGGATATGGTGGAAGCAGCACAGGTGCTTGGGATGCTTATTCACAATATTTAAATGCTGATAGTTTTCCTGTTGTATCGCCTGTCATGTACAACGATAGTTCATCTATTGTTTTTCATTCTGGTTATGGCTACAATCCAGATATGGCATATGGACAATATTCACCAGTTGCTACTCCTATGCCTTCTGTTATGTTAGATGGGCAACTATATTCTTCTCAACAAGTCCCATTCTCCCCATCATACTACCCACAACAAGCTGCACCTGGTTTACCTCACGGATCTTCCGCTGTTCCCATTTCACCTACAGAGATGATATCTCCTGAGAGTAGTGCATTTGAGAACATGCTTTATGGACCGGGAACAGGGGTTTTGCTAAATTTTGGGTCCTTTGGTGGGGGTAATCTTGGTTCAGGCTCTTTACCATCTCCAGCAGCTTATCCACAACCGATGGGAATGCTTGGCTCAAATGACCAGAATGTAGGGCAGGTTTCTCTACAACAGAGACCTATGCATGGATATGGATTGGTTTCAAGTGCCTTTGATGCTCGATATCCATTAAGCAGTTCATATCAGGGCTCTAACTTTGGTGGTGCATCCATTTCTTATCCATTTGTAAATGATCGAAGCCGACTTACCCTTGAGAAGGACAGAGGAAGAGACAGAGACCGGGACTCAATTTCACTTGTTAATGATCCACATGGCATCTTCAGTGACCGTAATCGGGGGCCAAGAGCTTTGAAGGCCAAGGGAAAAGGTGAACAAAGTGCTGCATATGGTGCAAGCAAAAACGATTTATCAACTTTGTTAGTTAGTCCTGATTCCTACAATCGGCCAGATTTTGCTACAGATTATGAGAGTGCCAAGTTTTTTATTATTAAGTCATTTAGTGAAGATAATGTTCACAGAAGCATCAAGTACAAAGTTTGGGCTAGTACTCCACATGGTAACAAGAAACTGGATGCTGCTTACCGCGAGGCAAAAGAGATCCAAGGAAATTGTCCAGTTCTTCTCTTTTTCTCTGTTAATGCCAGTGGCCAATTTTGTGGTGTATCTGAAATGGTTGGAGCTGTTGACTTTGAGAAAAATGCAGATTACTGGCAGCAGGACAGATGGAGTGGACAATTTCCAGTGAAGTGGCATATCATCAAAGATGTTCCTAATATAAGATTTAGGCACGTTTTACTTGAAAATAATGACAACAAACCTGTTACACACAGCAGAGATTCTCAGGAGGTGCCGCTGAAACAAGGTATTGAGATGTTGAAAGCTTTCAAGGACCATGATCCACGAACATCTATTTTAGATGATTTTGATTTCTATGACGAACGTGAGAGAATTTTGAAAGAAAGGAAAGCTAGACAGCAGCTAATTGGAACTGCAAGTTCTCTAAATTCACTTGGGGATAGTTCCAATAGCCCAATTTCTGACCAGTTTGCTCAAGCCCTTCGACTGGACGATAATAAGAAAGAAAAACCAGAAATTGAAAAGGGTGCAACTTCTAGAGTAGATGCTTCGATCTCACTTGATGATGATTCGGTAAAGTAA 1797 42.07 MERTDEDQDRILPIGERSLRSDNLKDSQLSPEGGRITSTNPSPNAVIGPSRDSIEQKVSMDAGTSISHAHPVNAYGSHEPNIQYGYGGSSTGAWDAYSQYLNADSFPVVSPVMYNDSSSIVFHSGYGYNPDMAYGQYSPVATPMPSVMLDGQLYSSQQVPFSPSYYPQQAAPGLPHGSSAVPISPTEMISPESSAFENMLYGPGTGVLLNFGSFGGGNLGSGSLPSPAAYPQPMGMLGSNDQNVGQVSLQQRPMHGYGLVSSAFDARYPLSSSYQGSNFGGASISYPFVNDRSRLTLEKDRGRDRDRDSISLVNDPHGIFSDRNRGPRALKAKGKGEQSAAYGASKNDLSTLLVSPDSYNRPDFATDYESAKFFIIKSFSEDNVHRSIKYKVWASTPHGNKKLDAAYREAKEIQGNCPVLLFFSVNASGQFCGVSEMVGAVDFEKNADYWQQDRWSGQFPVKWHIIKDVPNIRFRHVLLENNDNKPVTHSRDSQEVPLKQGIEMLKAFKDHDPRTSILDDFDFYDERERILKERKARQQLIGTASSLNSLGDSSNSPISDQFAQALRLDDNKKEKPEIEKGATSRVDASISLDDDSVK 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24493026 24511360 - Sed0027025.1 Sed08g1182 722958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1182 598 MobiDBLite consensus disorder prediction 566 582 - -
Sed08g1182 598 MobiDBLite consensus disorder prediction 566 598 - -
Sed08g1182 598 Pfam YT521-B-like domain 371 509 IPR007275 GO:0003723(InterPro)
Sed08g1182 598 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 44 567 IPR045168 GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0061157(PANTHER)
Sed08g1182 598 MobiDBLite consensus disorder prediction 1 50 - -
Sed08g1182 598 MobiDBLite consensus disorder prediction 1 23 - -
Sed08g1182 598 ProSiteProfiles YTH domain profile. 371 508 IPR007275 GO:0003723(InterPro)
Sed08g1182 598 Gene3D ph1033 like domains 354 523 - -
Sed08g1182 598 MobiDBLite consensus disorder prediction 300 342 - -
Sed08g1182 598 CDD YTH 372 508 IPR007275 GO:0003723(InterPro)
Sed08g1182 598 MobiDBLite consensus disorder prediction 24 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1182 K20102 - - csv:101206274 1061.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1182 Sed-Chr8:24493026 Sed09g0631 Sed-Chr9:7892602 4.10E-77 dispersed
Sed12g1501 Sed-Chr12:20493618 Sed08g1182 Sed-Chr8:24493026 1.90E-300 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g227 . . . . . Bpe14g01080 . . . . . . . . . . . . . . . . . . Cla06g00400 Cam06g0422 Cec06g0429 Cco06g0429 Clacu06g0408 Cmu06g0408 Cre06g1188 Cone14ag0687 Cone15ag0700 . . . . . . . . . . . . Bma02g00945 . Sed08g1182 . . . . . . Cpe12g00344 . Bhi12g01981 Tan06g2807 Cmetu02g1103 . . . Lcy12g0894 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005260 2 0 2 2 2 1 3 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 2 1 40