Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1204 ATGGGGGCCTGCTTGTCTGTTGGAAGGGAGAGGGCTACTCCTGGTCCCCCTGTACATCCTGTGCTCAAAGTAAGGAAACAAAAAGACTTGGACTATGGACTGAAGTCTAAGAATTCTGTGTTTGAGCAGCAGAATGAGGCAACGGTGCACAGAATTCCTGGTAGGATGTTCTTGAATGGATCCAGTGAAGTTGCTTCACTTTATACTCAACAGGGCAAGAAAGGGATGAACCAAGATGCCATGATTGTATGGGAGAATTTTGGCTCCAGAACAGATACGTTCTTCTGTGGAGTTTTCGATGGTCATGGTCCTTATGGTCATCTGGTCGCAAAAAGAGTGCGGGATTTTCTTCCCCTGAAACTGACTGAACATTGGGGGGCTAATACAAACAGTGAGGATATTTCGAAAGAGTTCGGTTGTAAAACAAAAGGCGTGAACAATGAAGATTCTGCCATAGAAACTGGTTGGAAGGAAGCCAGTTCCCCCCTTAAGCACCCAGCAATTTCTGAAAAACTGAAGGAATCATTTCTGAAGGCTTTCAAGATAATGGATGTGGAACTCAAAACGCAACCAAGTATTGATTGTTTCAGCAGTGGAACAACAGCAGTAGCTCTTGTTAAGCAGGCTCGAGATCTTATCATTGGAAACGTCGGGGACTCTCGAGCTGTACTGGGTACTAGAGATGGAGATAATTCTCTCCAAGCAGTTCAGTTGACCATAGATCTCAAGCCAGATATTCCAGCGGAAGCTGAGAGAATTCTCAAATGCAATGGTCGGGTATTTGCACATCGGGATGAACCGGAAGTTGCTAGAGTATGGCTTCCAAACACTGATTCTCCGGGGCTGGCAATGGCGCGATCGTTCGGAGACTTTTGCCTCAAGGATTTCGGCCTTATTTCTGTTCCTGAAATATCATATCGGTTTCTGAAAGACGAGGATGAGTTTATAGTTTTAGCTACAGATGGAATTTGGGATGTTCTCTCAAACAAAGATGTAGTGGACATCGTGGCATCGGTTCCTGCTCGTTCTGCAGCTCGATTATTGGTCGAGTCTGCAACTAAAGCATGGAGAAGAAAGTTTCCCTTTTCCAATATGGATGACTGTGCTGTTGTTTGCCTCTTTCTCGACTCGAACTTGATGGTGTCCGAGGCAAATGTTAAGTCCAAGGGAGGAGGTTAA 1179 45.21 MGACLSVGRERATPGPPVHPVLKVRKQKDLDYGLKSKNSVFEQQNEATVHRIPGRMFLNGSSEVASLYTQQGKKGMNQDAMIVWENFGSRTDTFFCGVFDGHGPYGHLVAKRVRDFLPLKLTEHWGANTNSEDISKEFGCKTKGVNNEDSAIETGWKEASSPLKHPAISEKLKESFLKAFKIMDVELKTQPSIDCFSSGTTAVALVKQARDLIIGNVGDSRAVLGTRDGDNSLQAVQLTIDLKPDIPAEAERILKCNGRVFAHRDEPEVARVWLPNTDSPGLAMARSFGDFCLKDFGLISVPEISYRFLKDEDEFIVLATDGIWDVLSNKDVVDIVASVPARSAARLLVESATKAWRRKFPFSNMDDCAVVCLFLDSNLMVSEANVKSKGGG 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24901493 24905583 + Sed0003397.1 Sed08g1204 722980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1204 392 SUPERFAMILY PP2C-like 61 376 IPR036457 -
Sed08g1204 392 Gene3D - 59 377 IPR036457 -
Sed08g1204 392 PANTHER PROTEIN PHOSPHATASE 55 374 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed08g1204 392 SMART PP2C_4 56 373 IPR001932 -
Sed08g1204 392 CDD PP2Cc 64 375 IPR001932 -
Sed08g1204 392 Pfam Protein phosphatase 2C 131 341 IPR001932 -
Sed08g1204 392 ProSiteProfiles PPM-type phosphatase domain profile. 64 375 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1204 Sed-Chr8:24901493 Sed11g1235 Sed-Chr11:28150901 2.00E-133 dispersed
Sed08g1204 Sed-Chr8:24901493 Sed09g0429 Sed-Chr9:4325155 1.40E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1204 - - - 0.0