Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1212 ATGAGGGTTGAATCGAAGGAAGGCGATTCCGGCGATGTTGTTCTTGTTCCTCCGACCAATTTCTCGATGGTCGAGGATGGCATTTTCCGATCCGGATTCCCTCAGCCCCCCAATTTCCCCTTCCTCGTTAACCTCAATCTCCGCTCCATTATATACTTGTGTCCAGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAGAGCTAATAACATCCAGCTTTTTCAATTCAAAATTGAAGGGACAAAGGAGCCATCTGTTTTGATTCGAAAGGAAGCTATCCTTGAGGCCCTAAAAATCCTAATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGAAAGCACCGAACAGGCTCGCTCGTTGGTTGCCTGAGAAAGTTTCAGAACTGGTGCTTGTCTTCAGTGTTCGAGGAGTACCAGCGATTCGCAGGCATGAAGTCGAGGGCGACGGATCTACAATTCATCGAGACATTCAACATTGCCTCTCTGAGGCAATGTGTTTACAGCATCATATACCAGTACCAAGGCTACAACTCAAAAAAGAGAAGGCTGATGTATAGAGAAGAAAATTTGCAGAAACCCCAAAAAACAGCAGTTTAG 606 45.54 MRVESKEGDSGDVVLVPPTNFSMVEDGIFRSGFPQPPNFPFLVNLNLRSIIYLCPEPYPEENLEFLRANNIQLFQFKIEGTKEPSVLIRKEAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLSSVFEEYQRFAGMKSRATDLQFIETFNIASLRQCVYSIIYQYQGYNSKKRRLMYREENLQKPQKTAV 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25021100 25023489 - Sed0009769.1 Sed08g1212 722988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1212 201 FunFam probable tyrosine-protein phosphatase At1g05000 14 164 - -
Sed08g1212 201 PRINTS Plant and fungal dual specificity phosphatase signature 71 85 IPR020428 GO:0016791(InterPro)
Sed08g1212 201 PRINTS Plant and fungal dual specificity phosphatase signature 88 102 IPR020428 GO:0016791(InterPro)
Sed08g1212 201 PRINTS Plant and fungal dual specificity phosphatase signature 15 32 IPR020428 GO:0016791(InterPro)
Sed08g1212 201 PRINTS Plant and fungal dual specificity phosphatase signature 52 65 IPR020428 GO:0016791(InterPro)
Sed08g1212 201 CDD PFA-DSP_Siw14 15 161 - -
Sed08g1212 201 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 159 IPR029021 -
Sed08g1212 201 Gene3D Protein tyrosine phosphatase superfamily 14 164 IPR029021 -
Sed08g1212 201 Pfam Tyrosine phosphatase family 15 164 IPR004861 -
Sed08g1212 201 ProSitePatterns Tyrosine specific protein phosphatases active site. 110 120 IPR016130 GO:0016311(InterPro)
Sed08g1212 201 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 192 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Sed08g1212 201 ProSiteProfiles Dual specificity protein phosphatase domain profile. 20 185 IPR020422 GO:0006470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3223 Sed-Chr5:41876659 Sed08g1212 Sed-Chr8:25021100 4.40E-58 dispersed
Sed06g0972 Sed-Chr6:13290970 Sed08g1212 Sed-Chr8:25021100 8.00E-94 dispersed
Sed08g1212 Sed-Chr8:25021100 Sed01g0708 Sed-Chr1:5188054 4.10E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1212 K18045 - csv:101211082 339.732