Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1215 ATGGAGTACGATTCTGGAATTCCGATGTCTGTCACGGAGGGTCATTCCTCTGCTATTGCGCCTTCTTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCCAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAACCAGACTGTTCTTATTACATCAGAACTGGCCTGTGTAGATTTGGAGCTACATGTAGATTTAATCATCCGCCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCGGAAAGGATTGGACAACCTGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTGCTTTAAATATTATAGGCTATCCACTTCGCCCGAGTGAAGCAGAATGCGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCAACTAATATGATGGTCTCACTGCGTGGCTCCCCTATTTACCCAACTGTACAATCACCAACTCCTGGTCAGCAGTCATATCCGGGAGGAAGCGCAAATTGGTCAAGGGCCTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATTTTACCCCAAGGAGTTCTTTCTGTTCCAGGCTGGAATACCTTCAATGATCAGCTAGGATCAGTTTCATCCTCTGAAAGTCCACAACAAACGAGAGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACCGGAGATTGTAAGTTTGGTGCCGTTTGTCGGTTTCATCATCCCAGAGAAAGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTGCCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTTGATCATCCTATGGGAATCTTCACATACAATCTCTCCGCAGCAGCATCGGGCAACGTCCCAGTTCAGCATTTGTTCGGGACATCTTCCGGAACAACTGCACTGAACTTGTCATCTGAAGGGCTAGTAGTTGAAGCAGGATCGGCAAAACCAAGGCGACTATCGCTCACGGAGACTCGAGAGATGCCATCTGACGATGAAAATATCGATGACGAGGGCTGA 1218 46.55 MEYDSGIPMSVTEGHSSAIAPSLREGSLANFDALWPMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNIIGYPLRPSEAECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSANWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAAASGNVPVQHLFGTSSGTTALNLSSEGLVVEAGSAKPRRLSLTETREMPSDDENIDDEG 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25123498 25140167 + Sed0011474.1 Sed08g1215 722991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1215 405 SMART c3hfinal6 53 80 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 SMART c3hfinal6 144 171 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 SMART c3hfinal6 264 291 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 SMART c3hfinal6 98 125 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 SMART c3hfinal6 310 337 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 FunFam CCCH type zinc finger protein 262 347 - -
Sed08g1215 405 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 FunFam Zinc finger nuclease 2 52 129 - -
Sed08g1215 405 SUPERFAMILY CCCH zinc finger 268 293 IPR036855 GO:0046872(InterPro)
Sed08g1215 405 SUPERFAMILY CCCH zinc finger 58 81 IPR036855 GO:0046872(InterPro)
Sed08g1215 405 Gene3D - 53 131 - -
Sed08g1215 405 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 PANTHER PROTEIN PHOSPHATASE RELATED 44 338 IPR050974 GO:0003729(PANTHER)
Sed08g1215 405 SUPERFAMILY CCCH zinc finger 102 127 IPR036855 GO:0046872(InterPro)
Sed08g1215 405 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 Gene3D - 132 180 - -
Sed08g1215 405 MobiDBLite consensus disorder prediction 244 264 - -
Sed08g1215 405 SUPERFAMILY CCCH zinc finger 147 172 IPR036855 GO:0046872(InterPro)
Sed08g1215 405 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 Gene3D - 253 339 - -
Sed08g1215 405 MobiDBLite consensus disorder prediction 386 405 - -
Sed08g1215 405 MobiDBLite consensus disorder prediction 244 261 - -
Sed08g1215 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 171 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 337 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 80 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 291 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 125 IPR000571 GO:0046872(InterPro)
Sed08g1215 405 SUPERFAMILY CCCH zinc finger 313 337 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1580 Sed-Chr1:11508656 Sed08g1215 Sed-Chr8:25123498 7.30E-23 dispersed
Sed04g3564 Sed-Chr4:45029087 Sed08g1215 Sed-Chr8:25123498 7.50E-11 dispersed
Sed06g0973 Sed-Chr6:13297904 Sed08g1215 Sed-Chr8:25123498 2.60E-160 dispersed
Sed06g0974 Sed-Chr6:13297904 Sed08g1215 Sed-Chr8:25123498 4.20E-155 dispersed
Sed06g0975 Sed-Chr6:13298562 Sed08g1215 Sed-Chr8:25123498 3.20E-141 dispersed
Sed08g1215 Sed-Chr8:25123498 Sed12g0848 Sed-Chr12:5223649 4.60E-24 dispersed
Sed08g1215 Sed-Chr8:25123498 Sed12g0847 Sed-Chr12:5223649 4.60E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39331 PF00642 zf-CCCH 2.70E-10 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1215 - - - 0.0