Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1215 | ATGGAGTACGATTCTGGAATTCCGATGTCTGTCACGGAGGGTCATTCCTCTGCTATTGCGCCTTCTTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTGTGGCCAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCTGGAGAACCAGACTGTTCTTATTACATCAGAACTGGCCTGTGTAGATTTGGAGCTACATGTAGATTTAATCATCCGCCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCGGAAAGGATTGGACAACCTGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTGCTTTAAATATTATAGGCTATCCACTTCGCCCGAGTGAAGCAGAATGCGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCAACTAATATGATGGTCTCACTGCGTGGCTCCCCTATTTACCCAACTGTACAATCACCAACTCCTGGTCAGCAGTCATATCCGGGAGGAAGCGCAAATTGGTCAAGGGCCTCCTTTATTCCCAGTCCACGATGGCAAGGCCCTTCCAGTTATGCATCTTTAATTTTACCCCAAGGAGTTCTTTCTGTTCCAGGCTGGAATACCTTCAATGATCAGCTAGGATCAGTTTCATCCTCTGAAAGTCCACAACAAACGAGAGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAATTTTACATGAAGACCGGAGATTGTAAGTTTGGTGCCGTTTGTCGGTTTCATCATCCCAGAGAAAGAGTAATTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTGCCATTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTTGATCATCCTATGGGAATCTTCACATACAATCTCTCCGCAGCAGCATCGGGCAACGTCCCAGTTCAGCATTTGTTCGGGACATCTTCCGGAACAACTGCACTGAACTTGTCATCTGAAGGGCTAGTAGTTGAAGCAGGATCGGCAAAACCAAGGCGACTATCGCTCACGGAGACTCGAGAGATGCCATCTGACGATGAAAATATCGATGACGAGGGCTGA | 1218 | 46.55 | MEYDSGIPMSVTEGHSSAIAPSLREGSLANFDALWPMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNIIGYPLRPSEAECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSANWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNTFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAAASGNVPVQHLFGTSSGTTALNLSSEGLVVEAGSAKPRRLSLTETREMPSDDENIDDEG | 405 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 25123498 | 25140167 | + | Sed0011474.1 | Sed08g1215 | 722991 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1215 | 405 | SMART | c3hfinal6 | 53 | 80 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | SMART | c3hfinal6 | 144 | 171 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | SMART | c3hfinal6 | 264 | 291 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | SMART | c3hfinal6 | 98 | 125 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | SMART | c3hfinal6 | 310 | 337 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | FunFam | CCCH type zinc finger protein | 262 | 347 | - | - | |
Sed08g1215 | 405 | ProSiteProfiles | Zinc finger C3H1-type profile. | 53 | 81 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | FunFam | Zinc finger nuclease 2 | 52 | 129 | - | - | |
Sed08g1215 | 405 | SUPERFAMILY | CCCH zinc finger | 268 | 293 | IPR036855 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | SUPERFAMILY | CCCH zinc finger | 58 | 81 | IPR036855 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | Gene3D | - | 53 | 131 | - | - | |
Sed08g1215 | 405 | ProSiteProfiles | Zinc finger C3H1-type profile. | 310 | 338 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | PANTHER | PROTEIN PHOSPHATASE RELATED | 44 | 338 | IPR050974 | GO:0003729(PANTHER) | |
Sed08g1215 | 405 | SUPERFAMILY | CCCH zinc finger | 102 | 127 | IPR036855 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | ProSiteProfiles | Zinc finger C3H1-type profile. | 264 | 292 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | Gene3D | - | 132 | 180 | - | - | |
Sed08g1215 | 405 | MobiDBLite | consensus disorder prediction | 244 | 264 | - | - | |
Sed08g1215 | 405 | SUPERFAMILY | CCCH zinc finger | 147 | 172 | IPR036855 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | ProSiteProfiles | Zinc finger C3H1-type profile. | 98 | 126 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | ProSiteProfiles | Zinc finger C3H1-type profile. | 144 | 172 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | Gene3D | - | 253 | 339 | - | - | |
Sed08g1215 | 405 | MobiDBLite | consensus disorder prediction | 386 | 405 | - | - | |
Sed08g1215 | 405 | MobiDBLite | consensus disorder prediction | 244 | 261 | - | - | |
Sed08g1215 | 405 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 147 | 171 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 311 | 337 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 54 | 80 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 265 | 291 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 101 | 125 | IPR000571 | GO:0046872(InterPro) | |
Sed08g1215 | 405 | SUPERFAMILY | CCCH zinc finger | 313 | 337 | IPR036855 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1580 | Sed-Chr1:11508656 | Sed08g1215 | Sed-Chr8:25123498 | 7.30E-23 | dispersed | |
Sed04g3564 | Sed-Chr4:45029087 | Sed08g1215 | Sed-Chr8:25123498 | 7.50E-11 | dispersed | |
Sed06g0973 | Sed-Chr6:13297904 | Sed08g1215 | Sed-Chr8:25123498 | 2.60E-160 | dispersed | |
Sed06g0974 | Sed-Chr6:13297904 | Sed08g1215 | Sed-Chr8:25123498 | 4.20E-155 | dispersed | |
Sed06g0975 | Sed-Chr6:13298562 | Sed08g1215 | Sed-Chr8:25123498 | 3.20E-141 | dispersed | |
Sed08g1215 | Sed-Chr8:25123498 | Sed12g0848 | Sed-Chr12:5223649 | 4.60E-24 | dispersed | |
Sed08g1215 | Sed-Chr8:25123498 | Sed12g0847 | Sed-Chr12:5223649 | 4.60E-24 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39331 | PF00642 | zf-CCCH | 2.70E-10 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1215 | - | - | - | 0.0 |