Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1236 ATGCCAAAAGGATATGTCTGTAAAGATCCTTCGGACTCGTGTTCCTCATATTTGACCTTCAGATCCAAGCTGCACAATAACACACAATCCAAATTCAGGGATCTCTTCAATTATTCTGTCTACGATACGACGTTCGCTAACGGTAGTTTGTTTGGTATTCAGATAGGGTGTTCATGTGTGCGTCATTCATACCGGTATGACGTCTATTATAATTATACAAGAGGTGAAAGTTTTGAAACGATAGCATGTGATATTTATCAAGGCTTGGTAGGCTGCTCGGCGCTAAAAAGTCATAACCAACAAGACTACATTGTCGAGAATAGTTCTACGATGAACATGGCAATCGAAGTTCCGTTGCGATGCGCATGTCCTACAAAAGCGGAGTTAAGTGGTTGGTTGTTTGCAAAGGATTTTGGTGTTGAAGAAGAGAGTGTCTTTGAAGCAAACAGGCTTAACAATTCAAGCCATATCTATCCATTTACGCCTGTTTTGGTTCCCTTGGACATGAATGGGACTTGCAGAGTATTCAAAGACAATTGCGGTTTTCATTATAAGAATTCTTCTTATTGGCATGGTCTTGTGCTTTTCATACTCCCCATTATAAAAAAGTTTTTCGAGCAAAATGGTGGCCTTTTGTTGCAAGAAAAACTACTCGAAGATAATAAAAGAGTAAACATATTCACACAAGAAGAACTTGAAGAAGCAACAGATAACTTCAGTGAAAGTAGAATTCTTGGCCAAGGAGGTTATGGCACAGTTTACAAAGGAGTGCTCCATGATGACACCATTGTTGCCATCAAGAAGTCAAAGCAAATCGAGAAAAATTGGACCGAACAATTCATTAATGAAGTTATTATCCTTTCCCAAATCAACCATAGAAATATTGTCAAACTTCTTGGTTGTTGTTTAGAAACTAAGTATCCCTTACTGGTCTATGAATTTGTTTCTAATGGAACACTTTCTCAACATATTCACACACAAGATCTTGAAGAACCTCCTTCTCTTTCATGGAGTAATTGTTTAAGAATCGCTACAGAAGTTGCAGGAGCTATATCTTACATGCACTCAACAGCTTCCATTCCTATTTATCATAGAGATATCAAGTCTTTAAACATACTCTTGGATGATAACTATAGTGCAAAAGTTTCAGATTTTGGAACATCAAGATTTGTGTCGTGCGATCAATCACATTTGACCACAAAAGTGTTGGGAACTTTTGGATATATAGATCCGGAGTATTTCAGATCAAGTCAATACACAGAAAAGAGTGATGTATATAGCTTTGGAGTCCTGATGGTAGAGCTCTTAACTGGGAAGTTACCTGTCACTTTTGCGAGAAATAATGGTGGAAATCTATTAGACTACTTCATTTCATTAGAAAGGAATAATCAACTTGTTGAAATTTTAGATATTGCAGTGGCCAAAGAAGAAACTATGGAAGTTGTTAACAACATAGCGACACTTGCTACGAAATGTTTAAGATCAAATGGGAAAGAGAGACCAACTATGAAACAAGTGTATTTGGAACTAGAGGGATTAGGAAAGTCTAAAGATTGCTATGAAATTTGTGAAGAAGTCGAATCAATTGAAACTTCTTCATCGTTCTCTCTGGAGTTTGGGGATATTGAGCTGATGGTTGAAACCACCCACCAAAATCTAAGCATTTGA 1668 37.23 MPKGYVCKDPSDSCSSYLTFRSKLHNNTQSKFRDLFNYSVYDTTFANGSLFGIQIGCSCVRHSYRYDVYYNYTRGESFETIACDIYQGLVGCSALKSHNQQDYIVENSSTMNMAIEVPLRCACPTKAELSGWLFAKDFGVEEESVFEANRLNNSSHIYPFTPVLVPLDMNGTCRVFKDNCGFHYKNSSYWHGLVLFILPIIKKFFEQNGGLLLQEKLLEDNKRVNIFTQEELEEATDNFSESRILGQGGYGTVYKGVLHDDTIVAIKKSKQIEKNWTEQFINEVIILSQINHRNIVKLLGCCLETKYPLLVYEFVSNGTLSQHIHTQDLEEPPSLSWSNCLRIATEVAGAISYMHSTASIPIYHRDIKSLNILLDDNYSAKVSDFGTSRFVSCDQSHLTTKVLGTFGYIDPEYFRSSQYTEKSDVYSFGVLMVELLTGKLPVTFARNNGGNLLDYFISLERNNQLVEILDIAVAKEETMEVVNNIATLATKCLRSNGKERPTMKQVYLELEGLGKSKDCYEICEEVESIETSSSFSLEFGDIELMVETTHQNLSI 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25491710 25503010 - Sed0024784.1 Sed08g1236 723012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1236 555 Gene3D Phosphorylase Kinase; domain 1 213 314 - -
Sed08g1236 555 SMART serkin_6 239 513 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1236 555 FunFam Wall-associated receptor kinase 2 212 314 - -
Sed08g1236 555 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 117 514 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed08g1236 555 SUPERFAMILY Protein kinase-like (PK-like) 223 510 IPR011009 -
Sed08g1236 555 CDD STKc_IRAK 245 513 - -
Sed08g1236 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1236 555 ProSitePatterns Protein kinases ATP-binding region signature. 245 268 IPR017441 GO:0005524(InterPro)
Sed08g1236 555 ProSiteProfiles Protein kinase domain profile. 239 513 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1236 555 FunFam Wall-associated receptor kinase 2 315 533 - -
Sed08g1236 555 Pfam Protein kinase domain 240 506 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1236 555 Gene3D Transferase(Phosphotransferase) domain 1 315 532 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1236 Sed-Chr8:25491710 Sed12g1954 Sed-Chr12:30594098 2.40E-172 dispersed
Sed08g1236 Sed-Chr8:25491710 Sed02g0586 Sed-Chr2:43527057 8.20E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79622 PF00069 Pkinase 3.10E-53 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1236 - - - 0.0