Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1258 ATGAGGATTATGATCAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTCAAAGCTGCGGTTATGAAATATGGAAAAAACCAGTGGGCTCGTATCTCCTCGCTTCTGGTTCGCAAATCTGCCAAGCAGTGTAAGGCTCGTTGGTATGAGTGGCTTGATCCCTCCATTAAGAAGACTGAGTGGACAAGAGAGGAGGATGAAAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGGACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGATATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGATCCAAGAAAGTTGCGCCCTGGAGAAATTGACCCAAATCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCTCGAGCAAGGTTAGCAAATACGAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAGGAGGCCAGGAGGCTTGCTTCATTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATAATCGACATCGAAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCGCCAGGTTTTTTTGATGTCGGCGAGGAAGATAGACCAGTGGAACATCCTAAGTTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGATGTAGAAACTCAGTTAAGAAAGCAAGATATTGCAAAGAATAAAATTTCTCAGAGGCAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAACTGAATGACCCAGAAATGGTGAGGAAAAGGTCTAAACTTATGCTTCCTGCACCTCAAATTTCAGATCATGAATTGGAGGAAATTGCTAAGATGGGATATGCCAGTGATCTTCTTGGTGGTAATGAAGAGGTTGGAGAAGGAAGTGGTGCTACTCAAGCTCTGCTAGCAAATTATGCACAAACACCACGTCAAGGAATGACACCTTTTCGAACTCCCCAAAGGACACCAGCTGGGAAGGGTGATGCCATAATGATGGAAGCAGAAAACCTTGCTCGGATGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAACTACATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAGAAGGAGATTCAAACACCAAATCCTATGCTAACACCCTCAACAACTCCAGGTGGTGTTGGTCTCACTCCTCGTAGTGGCATGACACCGGCTAGGGATGCTTACTCCTTTGGTGTGACTCCCAAAGGAACACCGATAAGAGATGAGTTGCATATCAATGAAGATATGGATGCACATGATAGTGTCAAACTAGAGTCCCAAAGACAAGTTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAACCTAAGAACGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAAGCTGAGGAGATGATTGAAGAGGACATGTCTGATAGAATTGCTCGAGAACGAGTTGAGGAAGAGGCAAGGCAACAAGCTTTGCTTAGGAAAAGATCAAAAGTGCTTCAAAGAGAGCTTCCTCGGCCTCCTATTGATTCTTTGGATCTCATTAGAAATACTTTGATGAGATCTGACGGAGACAAAAGTTCATTTGTTCCACCTACTCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTACTTGCTTTATTAGAGCATGATAATGCAAAGTACCCGATCGATGAAAAGGTCAACAAAGAGAAAAAGAAAGGTTCCAAGCGCACTAGAAATGGACCTCCTGCAACCATCCCTACAATAGATGATCTTGAAGAAACTGAGATGGAAGAGGCAGACTATTTGATCAAGGAAGAGGTCCGATATTTGTCTGTTGCAATGGGGCATGAAAAAGAATCCTTAGAGGAATTTGTGGAAGCTCACAAAACCTGTTTGAACGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCTAGTGTGGCTGGAAATCATGAGAAATTAGCTGCCCTTCAGCATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAATTCTCACACATGGCCATGAGACACGCTCGAAACAAAGCCTTTGGCCGCAAGTTGAGGCGACTTTCAAGCAAATAGACACTGCAGCAACAGAGTTGGAGTGCTTTGAAGCTCTTCAAAAGCAGGAAACGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAAGAGGTTCAGAAACAAAAAGAGTTGGAGAGAAGTCTGCAGCTACGGTATGGTAACCTTTTGGCAGACTTGGGAAAGATGCAGAAAATCATAGATGAGTGCAAAGAACAGGTCCAAAAAGAGGAAGAAATTGCAGTAGTGAAGCGTGCTCTTCTGTTGGCCGAGGCTGAAGCTAATCGAACTGTGGGAGAAAATGCTGACAGTTCTGAAGCTGCATCTGCATTAGAAGTAAATTCTATGGCTGTTGTTACCTCAACTTCCAATGAATTAACGGGTACTGAGCAACCGAACTCGTCCATGGGACATGAAAAAGAAACTTCTAATGTCATGGATATTGATGCCGAGAAAGAAAGTGTTGTGGTGAGCTTGGATACTGGCTTGTCTGATAACAAACTACCTTCTGCAGTGGGAGAGAATGCATCCTTGCCTGCTGACAATGGTTTTGAAGATTCTGATAAAAGTAAGACCATTGATGTTCCTTCACAAGAACTCGTGGTCCTTGCAGACGACACTCCAGATGTGACCATTAATGTGGAACACACGATCATGAATGATTCGGTTGGAGCAGCTATCGAAAATGCCGAATGTAGTATCGATACTGTGGAGGAAGCCAAAGATGTTGAAACTCAGCAGCGAGTGATTGAAGCTGGAAACTCAGATGCGAATCTGACGGATCTGGGTTCTGCTGCAGCTGAATCTTCTAACAAGGACGAGCCTGCAAATGCTGATAATGTTGAACTCCCTCATGGTGAAGGGGGAAGCAACTGA 3093 43.71 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEHPKFPTTIEELEGKRRIDVETQLRKQDIAKNKISQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLGGNEEVGEGSGATQALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARMRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSTTPGGVGLTPRSGMTPARDAYSFGVTPKGTPIRDELHINEDMDAHDSVKLESQRQVDLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEAEEMIEEDMSDRIARERVEEEARQQALLRKRSKVLQRELPRPPIDSLDLIRNTLMRSDGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTRNGPPATIPTIDDLEETEMEEADYLIKEEVRYLSVAMGHEKESLEEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQHEFEYVKKKMDDDTEKAVRLEKKVKILTHGHETRSKQSLWPQVEATFKQIDTAATELECFEALQKQETSAASHRISGIWEEVQKQKELERSLQLRYGNLLADLGKMQKIIDECKEQVQKEEEIAVVKRALLLAEAEANRTVGENADSSEAASALEVNSMAVVTSTSNELTGTEQPNSSMGHEKETSNVMDIDAEKESVVVSLDTGLSDNKLPSAVGENASLPADNGFEDSDKSKTIDVPSQELVVLADDTPDVTINVEHTIMNDSVGAAIENAECSIDTVEEAKDVETQQRVIEAGNSDANLTDLGSAAAESSNKDEPANADNVELPHGEGGSN 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26123528 26143460 - Sed0003092.1 Sed08g1258 723034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1258 1030 MobiDBLite consensus disorder prediction 599 623 - -
Sed08g1258 1030 Coils Coil 167 187 - -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 990 1015 - -
Sed08g1258 1030 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Sed08g1258 1030 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 157 176 - -
Sed08g1258 1030 Coils Coil 966 986 - -
Sed08g1258 1030 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Sed08g1258 1030 CDD SANT 10 53 IPR001005 -
Sed08g1258 1030 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Sed08g1258 1030 CDD SANT_CDC5_II 55 106 IPR047240 -
Sed08g1258 1030 Gene3D - 5 59 - -
Sed08g1258 1030 FunFam CDC5 cell division cycle 5-like 5 59 - -
Sed08g1258 1030 Pfam Myb-like DNA-binding domain 10 70 - -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 907 930 - -
Sed08g1258 1030 Coils Coil 799 819 - -
Sed08g1258 1030 SMART sant 58 105 IPR001005 -
Sed08g1258 1030 SMART sant 6 55 IPR001005 -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 400 421 - -
Sed08g1258 1030 FunFam CDC5 cell division cycle 5-like 60 120 - -
Sed08g1258 1030 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Sed08g1258 1030 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 860 880 - -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 990 1030 - -
Sed08g1258 1030 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 806 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Sed08g1258 1030 MobiDBLite consensus disorder prediction 381 421 - -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 113 150 - -
Sed08g1258 1030 Gene3D - 60 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1258 Sed-Chr8:26123528 Sed12g2104 Sed-Chr12:31737511 7.40E-10 dispersed
Sed08g1258 Sed-Chr8:26123528 Sed06g1546 Sed-Chr6:40309279 1.80E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39332 PF11831 Myb_Cef 1.10E-55 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1258 K12860 - csv:101206265 1654.03