Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1258 ATGAGGATTATGATCAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTCAAAGCTGCGGTTATGAAATATGGAAAAAACCAGTGGGCTCGTATCTCCTCGCTTCTGGTTCGCAAATCTGCCAAGCAGTGTAAGGCTCGTTGGTATGAGTGGCTTGATCCCTCCATTAAGAAGACTGAGTGGACAAGAGAGGAGGATGAAAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGGACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGATATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGATCCAAGAAAGTTGCGCCCTGGAGAAATTGACCCAAATCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCTCGAGCAAGGTTAGCAAATACGAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAGGAGGCCAGGAGGCTTGCTTCATTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATAATCGACATCGAAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCGCCAGGTTTTTTTGATGTCGGCGAGGAAGATAGACCAGTGGAACATCCTAAGTTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGATGTAGAAACTCAGTTAAGAAAGCAAGATATTGCAAAGAATAAAATTTCTCAGAGGCAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAACTGAATGACCCAGAAATGGTGAGGAAAAGGTCTAAACTTATGCTTCCTGCACCTCAAATTTCAGATCATGAATTGGAGGAAATTGCTAAGATGGGATATGCCAGTGATCTTCTTGGTGGTAATGAAGAGGTTGGAGAAGGAAGTGGTGCTACTCAAGCTCTGCTAGCAAATTATGCACAAACACCACGTCAAGGAATGACACCTTTTCGAACTCCCCAAAGGACACCAGCTGGGAAGGGTGATGCCATAATGATGGAAGCAGAAAACCTTGCTCGGATGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAACTACATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAGAAGGAGATTCAAACACCAAATCCTATGCTAACACCCTCAACAACTCCAGGTGGTGTTGGTCTCACTCCTCGTAGTGGCATGACACCGGCTAGGGATGCTTACTCCTTTGGTGTGACTCCCAAAGGAACACCGATAAGAGATGAGTTGCATATCAATGAAGATATGGATGCACATGATAGTGTCAAACTAGAGTCCCAAAGACAAGTTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAACCTAAGAACGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAAGCTGAGGAGATGATTGAAGAGGACATGTCTGATAGAATTGCTCGAGAACGAGTTGAGGAAGAGGCAAGGCAACAAGCTTTGCTTAGGAAAAGATCAAAAGTGCTTCAAAGAGAGCTTCCTCGGCCTCCTATTGATTCTTTGGATCTCATTAGAAATACTTTGATGAGATCTGACGGAGACAAAAGTTCATTTGTTCCACCTACTCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTACTTGCTTTATTAGAGCATGATAATGCAAAGTACCCGATCGATGAAAAGGTCAACAAAGAGAAAAAGAAAGGTTCCAAGCGCACTAGAAATGGACCTCCTGCAACCATCCCTACAATAGATGATCTTGAAGAAACTGAGATGGAAGAGGCAGACTATTTGATCAAGGAAGAGGTCCGATATTTGTCTGTTGCAATGGGGCATGAAAAAGAATCCTTAGAGGAATTTGTGGAAGCTCACAAAACCTGTTTGAACGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCTAGTGTGGCTGGAAATCATGAGAAATTAGCTGCCCTTCAGCATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAATTCTCACACATGGCCATGAGACACGCTCGAAACAAAGCCTTTGGCCGCAAGTTGAGGCGACTTTCAAGCAAATAGACACTGCAGCAACAGAGTTGGAGTGCTTTGAAGCTCTTCAAAAGCAGGAAACGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAAGAGGTTCAGAAACAAAAAGAGTTGGAGAGAAGTCTGCAGCTACGGTATGGTAACCTTTTGGCAGACTTGGGAAAGATGCAGAAAATCATAGATGAGTGCAAAGAACAGGTCCAAAAAGAGGAAGAAATTGCAGTAGTGAAGCGTGCTCTTCTGTTGGCCGAGGCTGAAGCTAATCGAACTGTGGGAGAAAATGCTGACAGTTCTGAAGCTGCATCTGCATTAGAAGTAAATTCTATGGCTGTTGTTACCTCAACTTCCAATGAATTAACGGGTACTGAGCAACCGAACTCGTCCATGGGACATGAAAAAGAAACTTCTAATGTCATGGATATTGATGCCGAGAAAGAAAGTGTTGTGGTGAGCTTGGATACTGGCTTGTCTGATAACAAACTACCTTCTGCAGTGGGAGAGAATGCATCCTTGCCTGCTGACAATGGTTTTGAAGATTCTGATAAAAGTAAGACCATTGATGTTCCTTCACAAGAACTCGTGGTCCTTGCAGACGACACTCCAGATGTGACCATTAATGTGGAACACACGATCATGAATGATTCGGTTGGAGCAGCTATCGAAAATGCCGAATGTAGTATCGATACTGTGGAGGAAGCCAAAGATGTTGAAACTCAGCAGCGAGTGATTGAAGCTGGAAACTCAGATGCGAATCTGACGGATCTGGGTTCTGCTGCAGCTGAATCTTCTAACAAGGACGAGCCTGCAAATGCTGATAATGTTGAACTCCCTCATGGTGAAGGGGGAAGCAACTGA 3093 43.71 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEHPKFPTTIEELEGKRRIDVETQLRKQDIAKNKISQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLGGNEEVGEGSGATQALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARMRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSTTPGGVGLTPRSGMTPARDAYSFGVTPKGTPIRDELHINEDMDAHDSVKLESQRQVDLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEAEEMIEEDMSDRIARERVEEEARQQALLRKRSKVLQRELPRPPIDSLDLIRNTLMRSDGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTRNGPPATIPTIDDLEETEMEEADYLIKEEVRYLSVAMGHEKESLEEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQHEFEYVKKKMDDDTEKAVRLEKKVKILTHGHETRSKQSLWPQVEATFKQIDTAATELECFEALQKQETSAASHRISGIWEEVQKQKELERSLQLRYGNLLADLGKMQKIIDECKEQVQKEEEIAVVKRALLLAEAEANRTVGENADSSEAASALEVNSMAVVTSTSNELTGTEQPNSSMGHEKETSNVMDIDAEKESVVVSLDTGLSDNKLPSAVGENASLPADNGFEDSDKSKTIDVPSQELVVLADDTPDVTINVEHTIMNDSVGAAIENAECSIDTVEEAKDVETQQRVIEAGNSDANLTDLGSAAAESSNKDEPANADNVELPHGEGGSN 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26123528 26143460 - Sed0003092.1 Sed08g1258 723034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1258 1030 MobiDBLite consensus disorder prediction 599 623 - -
Sed08g1258 1030 Coils Coil 167 187 - -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 990 1015 - -
Sed08g1258 1030 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Sed08g1258 1030 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 157 176 - -
Sed08g1258 1030 Coils Coil 966 986 - -
Sed08g1258 1030 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Sed08g1258 1030 CDD SANT 10 53 IPR001005 -
Sed08g1258 1030 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Sed08g1258 1030 CDD SANT_CDC5_II 55 106 IPR047240 -
Sed08g1258 1030 Gene3D - 5 59 - -
Sed08g1258 1030 FunFam CDC5 cell division cycle 5-like 5 59 - -
Sed08g1258 1030 Pfam Myb-like DNA-binding domain 10 70 - -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 907 930 - -
Sed08g1258 1030 Coils Coil 799 819 - -
Sed08g1258 1030 SMART sant 58 105 IPR001005 -
Sed08g1258 1030 SMART sant 6 55 IPR001005 -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 400 421 - -
Sed08g1258 1030 FunFam CDC5 cell division cycle 5-like 60 120 - -
Sed08g1258 1030 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Sed08g1258 1030 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 860 880 - -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 990 1030 - -
Sed08g1258 1030 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 806 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Sed08g1258 1030 MobiDBLite consensus disorder prediction 381 421 - -
Sed08g1258 1030 MobiDBLite consensus disorder prediction 113 150 - -
Sed08g1258 1030 Gene3D - 60 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1258 K12860 - - csv:101206265 1654.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1258 Sed-Chr8:26123528 Sed12g2104 Sed-Chr12:31737511 7.40E-10 dispersed
Sed08g1258 Sed-Chr8:26123528 Sed06g1546 Sed-Chr6:40309279 1.80E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g1258 . 1 818 MYB-Related Transcription Factor Family AT1G09770 75.7 0.0e+00 1178.7
Sed12g2104 . 161 627 MYB-Related Transcription Factor Family AT3G18100 54.1 2.5e-147 520.4
Sed12g2104 . 161 627 MYB-Related Transcription Factor Family AT3G18100 54.1 2.5e-147 520.4
Sed08g1258 . 1 818 MYB-Related Transcription Factor Family AT1G09770 75.7 0.0e+00 1178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39332 PF11831 Myb_Cef 1.10E-55 No_clan Sed TF