Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g1258 | ATGAGGATTATGATCAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTCAAAGCTGCGGTTATGAAATATGGAAAAAACCAGTGGGCTCGTATCTCCTCGCTTCTGGTTCGCAAATCTGCCAAGCAGTGTAAGGCTCGTTGGTATGAGTGGCTTGATCCCTCCATTAAGAAGACTGAGTGGACAAGAGAGGAGGATGAAAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGGACTATTGCACCAATTGTTGGGCGTACTCCATCCCAGTGCCTCGAGCGATATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGATCCAAGAAAGTTGCGCCCTGGAGAAATTGACCCAAATCCAGAATCAAAGCCTGCACGTCCTGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCTCGAGCAAGGTTAGCAAATACGAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAGGAGGCCAGGAGGCTTGCTTCATTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATAATCGACATCGAAAGAGAAAGAGGAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCGCCAGGTTTTTTTGATGTCGGCGAGGAAGATAGACCAGTGGAACATCCTAAGTTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGATGTAGAAACTCAGTTAAGAAAGCAAGATATTGCAAAGAATAAAATTTCTCAGAGGCAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAACTGAATGACCCAGAAATGGTGAGGAAAAGGTCTAAACTTATGCTTCCTGCACCTCAAATTTCAGATCATGAATTGGAGGAAATTGCTAAGATGGGATATGCCAGTGATCTTCTTGGTGGTAATGAAGAGGTTGGAGAAGGAAGTGGTGCTACTCAAGCTCTGCTAGCAAATTATGCACAAACACCACGTCAAGGAATGACACCTTTTCGAACTCCCCAAAGGACACCAGCTGGGAAGGGTGATGCCATAATGATGGAAGCAGAAAACCTTGCTCGGATGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAACTACATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAGAAGGAGATTCAAACACCAAATCCTATGCTAACACCCTCAACAACTCCAGGTGGTGTTGGTCTCACTCCTCGTAGTGGCATGACACCGGCTAGGGATGCTTACTCCTTTGGTGTGACTCCCAAAGGAACACCGATAAGAGATGAGTTGCATATCAATGAAGATATGGATGCACATGATAGTGTCAAACTAGAGTCCCAAAGACAAGTTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAACCTAAGAACGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGATAAAGAAGAAGCTGAGGAGATGATTGAAGAGGACATGTCTGATAGAATTGCTCGAGAACGAGTTGAGGAAGAGGCAAGGCAACAAGCTTTGCTTAGGAAAAGATCAAAAGTGCTTCAAAGAGAGCTTCCTCGGCCTCCTATTGATTCTTTGGATCTCATTAGAAATACTTTGATGAGATCTGACGGAGACAAAAGTTCATTTGTTCCACCTACTCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTACTTGCTTTATTAGAGCATGATAATGCAAAGTACCCGATCGATGAAAAGGTCAACAAAGAGAAAAAGAAAGGTTCCAAGCGCACTAGAAATGGACCTCCTGCAACCATCCCTACAATAGATGATCTTGAAGAAACTGAGATGGAAGAGGCAGACTATTTGATCAAGGAAGAGGTCCGATATTTGTCTGTTGCAATGGGGCATGAAAAAGAATCCTTAGAGGAATTTGTGGAAGCTCACAAAACCTGTTTGAACGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCTAGTGTGGCTGGAAATCATGAGAAATTAGCTGCCCTTCAGCATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGCTGGAGAAGAAGGTTAAAATTCTCACACATGGCCATGAGACACGCTCGAAACAAAGCCTTTGGCCGCAAGTTGAGGCGACTTTCAAGCAAATAGACACTGCAGCAACAGAGTTGGAGTGCTTTGAAGCTCTTCAAAAGCAGGAAACGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAAGAGGTTCAGAAACAAAAAGAGTTGGAGAGAAGTCTGCAGCTACGGTATGGTAACCTTTTGGCAGACTTGGGAAAGATGCAGAAAATCATAGATGAGTGCAAAGAACAGGTCCAAAAAGAGGAAGAAATTGCAGTAGTGAAGCGTGCTCTTCTGTTGGCCGAGGCTGAAGCTAATCGAACTGTGGGAGAAAATGCTGACAGTTCTGAAGCTGCATCTGCATTAGAAGTAAATTCTATGGCTGTTGTTACCTCAACTTCCAATGAATTAACGGGTACTGAGCAACCGAACTCGTCCATGGGACATGAAAAAGAAACTTCTAATGTCATGGATATTGATGCCGAGAAAGAAAGTGTTGTGGTGAGCTTGGATACTGGCTTGTCTGATAACAAACTACCTTCTGCAGTGGGAGAGAATGCATCCTTGCCTGCTGACAATGGTTTTGAAGATTCTGATAAAAGTAAGACCATTGATGTTCCTTCACAAGAACTCGTGGTCCTTGCAGACGACACTCCAGATGTGACCATTAATGTGGAACACACGATCATGAATGATTCGGTTGGAGCAGCTATCGAAAATGCCGAATGTAGTATCGATACTGTGGAGGAAGCCAAAGATGTTGAAACTCAGCAGCGAGTGATTGAAGCTGGAAACTCAGATGCGAATCTGACGGATCTGGGTTCTGCTGCAGCTGAATCTTCTAACAAGGACGAGCCTGCAAATGCTGATAATGTTGAACTCCCTCATGGTGAAGGGGGAAGCAACTGA | 3093 | 43.71 | MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEHPKFPTTIEELEGKRRIDVETQLRKQDIAKNKISQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLGGNEEVGEGSGATQALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARMRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSTTPGGVGLTPRSGMTPARDAYSFGVTPKGTPIRDELHINEDMDAHDSVKLESQRQVDLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEAEEMIEEDMSDRIARERVEEEARQQALLRKRSKVLQRELPRPPIDSLDLIRNTLMRSDGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTRNGPPATIPTIDDLEETEMEEADYLIKEEVRYLSVAMGHEKESLEEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQHEFEYVKKKMDDDTEKAVRLEKKVKILTHGHETRSKQSLWPQVEATFKQIDTAATELECFEALQKQETSAASHRISGIWEEVQKQKELERSLQLRYGNLLADLGKMQKIIDECKEQVQKEEEIAVVKRALLLAEAEANRTVGENADSSEAASALEVNSMAVVTSTSNELTGTEQPNSSMGHEKETSNVMDIDAEKESVVVSLDTGLSDNKLPSAVGENASLPADNGFEDSDKSKTIDVPSQELVVLADDTPDVTINVEHTIMNDSVGAAIENAECSIDTVEEAKDVETQQRVIEAGNSDANLTDLGSAAAESSNKDEPANADNVELPHGEGGSN | 1030 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 26123528 | 26143460 | - | Sed0003092.1 | Sed08g1258 | 723034 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g1258 | 1030 | MobiDBLite | consensus disorder prediction | 599 | 623 | - | - | |
Sed08g1258 | 1030 | Coils | Coil | 167 | 187 | - | - | |
Sed08g1258 | 1030 | MobiDBLite | consensus disorder prediction | 990 | 1015 | - | - | |
Sed08g1258 | 1030 | Pfam | pre-mRNA splicing factor component | 407 | 658 | IPR021786 | - | |
Sed08g1258 | 1030 | ProSiteProfiles | Myb-like domain profile. | 2 | 53 | IPR001005 | - | |
Sed08g1258 | 1030 | MobiDBLite | consensus disorder prediction | 157 | 176 | - | - | |
Sed08g1258 | 1030 | Coils | Coil | 966 | 986 | - | - | |
Sed08g1258 | 1030 | SUPERFAMILY | Homeodomain-like | 33 | 106 | IPR009057 | - | |
Sed08g1258 | 1030 | CDD | SANT | 10 | 53 | IPR001005 | - | |
Sed08g1258 | 1030 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 58 | 107 | IPR017930 | - | |
Sed08g1258 | 1030 | CDD | SANT_CDC5_II | 55 | 106 | IPR047240 | - | |
Sed08g1258 | 1030 | Gene3D | - | 5 | 59 | - | - | |
Sed08g1258 | 1030 | FunFam | CDC5 cell division cycle 5-like | 5 | 59 | - | - | |
Sed08g1258 | 1030 | Pfam | Myb-like DNA-binding domain | 10 | 70 | - | - | |
Sed08g1258 | 1030 | MobiDBLite | consensus disorder prediction | 907 | 930 | - | - | |
Sed08g1258 | 1030 | Coils | Coil | 799 | 819 | - | - | |
Sed08g1258 | 1030 | SMART | sant | 58 | 105 | IPR001005 | - | |
Sed08g1258 | 1030 | SMART | sant | 6 | 55 | IPR001005 | - | |
Sed08g1258 | 1030 | MobiDBLite | consensus disorder prediction | 400 | 421 | - | - | |
Sed08g1258 | 1030 | FunFam | CDC5 cell division cycle 5-like | 60 | 120 | - | - | |
Sed08g1258 | 1030 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 2 | 57 | IPR017930 | - | |
Sed08g1258 | 1030 | ProSiteProfiles | Myb-like domain profile. | 54 | 103 | IPR001005 | - | |
Sed08g1258 | 1030 | MobiDBLite | consensus disorder prediction | 860 | 880 | - | - | |
Sed08g1258 | 1030 | MobiDBLite | consensus disorder prediction | 990 | 1030 | - | - | |
Sed08g1258 | 1030 | PANTHER | CELL DIVISION CYCLE 5-LIKE PROTEIN | 1 | 806 | IPR047242 | GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER) | |
Sed08g1258 | 1030 | MobiDBLite | consensus disorder prediction | 381 | 421 | - | - | |
Sed08g1258 | 1030 | MobiDBLite | consensus disorder prediction | 113 | 150 | - | - | |
Sed08g1258 | 1030 | Gene3D | - | 60 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g1258 | Sed-Chr8:26123528 | Sed12g2104 | Sed-Chr12:31737511 | 7.40E-10 | dispersed | |
Sed08g1258 | Sed-Chr8:26123528 | Sed06g1546 | Sed-Chr6:40309279 | 1.80E-11 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39332 | PF11831 | Myb_Cef | 1.10E-55 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g1258 | K12860 | - | csv:101206265 | 1654.03 |