Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1273 ATGGCCGGAATCCCCTCTGAGGGATTGGGGGATGACTTTTTTGAGCAGATACTGGCGGTGCAGCCGGTGTACGGCGGGGGCGGCGGCGATGTGGTGTCTATGCCTATGGGGTTGCCACTTGGCGGCGGGGGAATGGGTATGCCTTTGGGGCTGAATTTGGAACAGGGGTTTTTGAGGCATGAAAGGTTTAGAGATGAGCTTGATGCTCATAATAACAACAACAATAATAATGTTTCTTCTTCTTCAACTGCCTCTTCAGGAATCACTGAGAGAGATTCTTCGGTGCAGCACATGAGCAGCTTGTTTCCGACCTTTGGACATTTTCAGACCCAATCACTCCGGCCACCGCCGCCGCAGCTGCATCAGCCCTTTCACAGTCAGACAAATCCTGGGATGGCTACTGCCGTACCGCAACCACCGCAAATCCGTCCAAGAGTTCGAGCAAGACGTGGGCAAGCGACCGATCCTCACAGTATTGCAGAACGGTTACGTCGAGAAAGAATTGCAGAAAGAATGAAAGCCTTGCAAGAGTTGGTTCCTAGTTGCAATAAGACTGATAGAGCGGCAATGCTCGATGAAATTGTGGACTATGTGAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGCGGGGCAGGCGCGGTGGCTCAACTTGTGGCTGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAACAAGCATGGGAAAAGTGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAATTGATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTTTATGCATCATGCCCATCTCATTAGCCTCAGCTATTTTCAGGACACACCAAGACCCTCCAATGATGGTCAAGCCAGAAATGAACACTCCCTAG 921 49.95 MAGIPSEGLGDDFFEQILAVQPVYGGGGGDVVSMPMGLPLGGGGMGMPLGLNLEQGFLRHERFRDELDAHNNNNNNNVSSSSTASSGITERDSSVQHMSSLFPTFGHFQTQSLRPPPPQLHQPFHSQTNPGMATAVPQPPQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQDPPMMVKPEMNTP 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26496972 26506143 + Sed0009964.1 Sed08g1273 723049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1273 306 Gene3D - 145 202 IPR036638 GO:0046983(InterPro)
Sed08g1273 306 MobiDBLite consensus disorder prediction 70 94 - -
Sed08g1273 306 Pfam Helix-loop-helix DNA-binding domain 157 202 IPR011598 GO:0046983(InterPro)
Sed08g1273 306 MobiDBLite consensus disorder prediction 68 94 - -
Sed08g1273 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 286 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed08g1273 306 SMART finulus 158 207 IPR011598 GO:0046983(InterPro)
Sed08g1273 306 FunFam Basic helix-loop-helix transcription factor 147 209 - -
Sed08g1273 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983(InterPro)
Sed08g1273 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 211 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1273 Sed-Chr8:26496972 Sed09g1087 Sed-Chr9:34703580 7.20E-70 dispersed
Sed13g1799 Sed-Chr13:23005146 Sed08g1273 Sed-Chr8:26496972 6.90E-15 dispersed
Sed08g1273 Sed-Chr8:26496972 Sed08g0596 Sed-Chr8:4098574 9.10E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39333 PF00010 HLH 6.60E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1273 - - - 0.0