Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1279 ATGAAACACATTTTCAAGAAATTTCACATAGGAAGCAATCACGAGCCCAATCGCTCCAACGAGAATCCCTCGCCCCCACCATGTTTTTCTGACAATCGCCCGCCTTCTGCTCCCGGGCAGACTTCCGGTAACTCCCCGTCCAGTCCTTCGTCCTCGCCGTCGCCTGGAACTGCTCCTCCTGGGGGCGGAAGCGCGGCTTCGGTTTCGGTGGCTCACAATCGCTCTGATTACTTTTCTTCTGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCGATTAGCGCCTCCAATTCCGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCCACGCTTTTGAGCTTGGGGAATCATCGGATTGATTCCACTGCCAGGGACAAGGGAGATGCTGCCGAGACGCTCTCCAGGCAATATTGGGAATATAATCTGCTTGACTATGAAGAAAAAGTTGTCAATGGGTTTTATGATGTCCTCTCTACGGATTCATCAGTCCAAGGAAAAATTCCATCTCTATCCGATATTGAAGCAAGCTTTGGTAGTTCTTGCTTTGAAGTCGTGATGGTCAATATGACTGTTGATCGTGCATTAGAAGAGCTGCTGCAAATTGCTCAATGTATTGCAGATTGCCCCGGCACTGTGGTGAGAGTTCAGAGGCTGGCTGAGCTTGTTGAGAGACACATGGGTGGACCTGTAAAGGATGCCAATTTTATGCTAGCGAAGTGGATGGAAAGAAGCACAGAATTAAGGACTTCACTTCACACCAGTATATTGCCTATTGGTTCTATTAATATTGGCCTCTCAAGACATCGGGCATTGCTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTATACCAGCGGACATATTAAGTGTAAAGGACACCAGTACCTTTAAGCCTTACAACCCTAAAGTGAGCAAAATTTCTTCTCTTCACCACTCCAATGATGTTGGAGTTTCTTCCATGGCACCATCACATGAGGAAGGCAGCAACCAAAACTTTGAAGCAGAGGCCAGCTCTCAAGTGGGCTATGGAAGGACAGAGTCTGTGCCGTCAAGCTCAGGTACTGGGACTTCTCGGTACAAAGGGGCCCTTACAGGTGATAGTAATGTTAGACTGAATGTCAATATAGTTCCATTTGGTCAAAGCTCCGAGGATTCCAAAAACCTTTTTGCAGATCTTAATCCCTTCCAAATAAAAGGAACTGGAAAAAGTTTCATTCTTAACAAATCCTCTGATAATAAATTTGAGGAGCTCCAGAAACCCACTATTGGACATCCTCCTATTCCGTTGTGGAAAAATCGGGTTGCTTTCAATGCAGTTCCCAAGAAACAAGAGTACGACTATATGGAGGGCCGTTTTCCGAGAACTAATCGTGGATCTAACGACCATAATATGACATTGTCTTCTTCTGCCAACTCTACTGTCTCTGAAAGTGTCAACCCTGGTGGTCCAGGAACATCAATTGACTCAGGTGTATCGATTAGAAGTGCTGAAGTTGGAAGTTCTTCATCTTATATGAACTCGTGGCCGATATCTACCGTGATTGAGCCTAATATTTTTCCTTTGATTGGCGAAGAGAATAGAAAGGCCAATGGAGAACATTCTGGAATCAAAGACTTGCATGATGAAAAGGTTGATACTGTTGATGGACACGATAATTTGATCAGATTTGATAACCGTAGAAAGTTCACACATGACAAATCTGTTGAGTCCAATTTGATATTGAAGGATCCGGGAAGTCCCATCATTGAACCAAGTTCGAATAGGTTTGAGAAAGTTTATGATGATGTGGATGTCGGGCAATGTGAAATACAATGGGAGGACCTCATTATTGGTGAAAGGATTGGACTAGGTTCATATGGAGAAGTTTATCATGCTGATTGGAATGGCACAGAGGTTGCTGTAAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTATTGATAATGCGACAGCTACGGCATCCAAATATTGTTCTGTTTATGGGTGCTGTCACTCGTCCTCCTAATCTTTCCATTGTTACTGAGTTTCTTCCTAGAGGAAGCTTGTACCGAATCATTCACCGCCCACATTGTCAAATTGATGAAAAGCGCAGAATAAAAATGGCCCTTGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTCATCCAACAATCGTTCATCGGGATCTGAAGTCACCGAATCTTTTGGTTGATAAGAACTGGAATGTGAAGGTATCAGATTTTGGGTTGTCACGCCTGAAGCACAACACATTTTTGTCATCCAAATCGACTGGAGGAACGCCCGAGTGGATGGCACCAGAGGTTCTCCGGAATGAGCCTTCAAATGAGAAGTGCGATGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACGTTGAGACTGCCTTGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCAGTTGGTTTCCAGAATCGACGACTCGAGATACCGAAGGAAGTGGATCCCACGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCAAACTTGCGGCCCTCATTTGTACAATTAGCCAATATTCTTAAGCCACTGCAGCGACTTGTCCTGCCACCGCATTCAGACCAGTCGAGTTCATCGCCGCTGCAAGAGATTTCTGTAAATTCTACACCTTGA 2796 44.71 MKHIFKKFHIGSNHEPNRSNENPSPPPCFSDNRPPSAPGQTSGNSPSSPSSSPSPGTAPPGGGSAASVSVAHNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTARDKGDAAETLSRQYWEYNLLDYEEKVVNGFYDVLSTDSSVQGKIPSLSDIEASFGSSCFEVVMVNMTVDRALEELLQIAQCIADCPGTVVRVQRLAELVERHMGGPVKDANFMLAKWMERSTELRTSLHTSILPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIIKLEDEREFLVDLMAAPGTLIPADILSVKDTSTFKPYNPKVSKISSLHHSNDVGVSSMAPSHEEGSNQNFEAEASSQVGYGRTESVPSSSGTGTSRYKGALTGDSNVRLNVNIVPFGQSSEDSKNLFADLNPFQIKGTGKSFILNKSSDNKFEELQKPTIGHPPIPLWKNRVAFNAVPKKQEYDYMEGRFPRTNRGSNDHNMTLSSSANSTVSESVNPGGPGTSIDSGVSIRSAEVGSSSSYMNSWPISTVIEPNIFPLIGEENRKANGEHSGIKDLHDEKVDTVDGHDNLIRFDNRRKFTHDKSVESNLILKDPGSPIIEPSSNRFEKVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVARGMNCLHTSHPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPTVARIIWECWQTDPNLRPSFVQLANILKPLQRLVLPPHSDQSSSSPLQEISVNSTP 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26541443 26555567 - Sed0002699.1 Sed08g1279 723055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1279 931 ProSitePatterns Protein kinases ATP-binding region signature. 656 678 IPR017441 GO:0005524(InterPro)
Sed08g1279 931 FunFam Serine/threonine-protein kinase isoform 1 641 728 - -
Sed08g1279 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1279 931 MobiDBLite consensus disorder prediction 34 51 - -
Sed08g1279 931 PRINTS Tyrosine kinase catalytic domain signature 763 781 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1279 931 PRINTS Tyrosine kinase catalytic domain signature 724 737 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1279 931 PRINTS Tyrosine kinase catalytic domain signature 829 851 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1279 931 PRINTS Tyrosine kinase catalytic domain signature 810 820 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1279 931 PRINTS Tyrosine kinase catalytic domain signature 873 895 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1279 931 Gene3D Transferase(Phosphotransferase) domain 1 729 910 - -
Sed08g1279 931 MobiDBLite consensus disorder prediction 912 931 - -
Sed08g1279 931 CDD STKc_MAP3K-like 656 902 - -
Sed08g1279 931 MobiDBLite consensus disorder prediction 495 533 - -
Sed08g1279 931 PANTHER SERINE-THREONINE PROTEIN KINASE 78 903 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed08g1279 931 Pfam Protein tyrosine and serine/threonine kinase 652 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g1279 931 Gene3D Phosphorylase Kinase; domain 1 643 727 - -
Sed08g1279 931 MobiDBLite consensus disorder prediction 1 68 - -
Sed08g1279 931 ProSiteProfiles Protein kinase domain profile. 650 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1279 931 MobiDBLite consensus disorder prediction 499 533 - -
Sed08g1279 931 Pfam Ethylene-responsive protein kinase Le-CTR1 132 325 - -
Sed08g1279 931 FunFam PAS domain-containing protein tyrosine kinase family protein 728 916 - -
Sed08g1279 931 SMART serkin_6 650 905 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g1279 931 SUPERFAMILY Protein kinase-like (PK-like) 641 918 IPR011009 -
Sed08g1279 931 MobiDBLite consensus disorder prediction 361 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1279 Sed-Chr8:26541443 Sed13g1856 Sed-Chr13:23515876 2.00E-184 dispersed
Sed08g1279 Sed-Chr8:26541443 Sed11g1836 Sed-Chr11:33151905 5.60E-190 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79625 PF07714 PK_Tyr_Ser-Thr 1.30E-62 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1279 - - - 0.0