Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1289 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGACGACGACGACGAATCCCTCGACGACGACGACGACGACGACGACGAGGATTTGAACGACGATCCTTCCCCTTCCACTTCCTCCGCCGCCGCCGCCCTTCCTCCCGCTTCCGCCGTCGTCACCATCGCCATTCCCAGCACCGCCGCCCGTGCGGCCTCCCTCACTCCTCCCCCTTCGATCGTCTCCCCTTCCGATCTGATCCTCCGCCGCCGCCTCGACGCCGCCCCTCCCGAGCCGCCCGAGAAGAAGCCCTTGGATGAGTCCAGGAAGCTGTTCCAACGCCTCTGGACCGACGAGGACGAGATCGAGCTCTTGCAGGGCTTCTTGGAATACACGATGCAGCGAGGTACGACTCACCACCATCAGAACGACACCGCCTTGTTCTATGACCAGATCAAGTCCCGATTGCAGTTGGATTTCAACAAGAATCAGCTCGTCGAGAAGCTCCGGAGGTTGAAGAAGAAGTACCGCAACGTGGTCGAGAAGATTAACTCTGGTAAGGACTTTAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATCTCTCGCAAGATCTGGAGCAATACCGCCCGAATCGGAGTCGAGGACAACGCTTTGGACGACGATGAGCCTGCTCCGAATCCCTATGCCAACTACATGGACGTTAAAAACGAAGAGATGATGCCCAATTGCGCAGAGAAGAAACCGACGCCCACTCCAAAATCGCGCAAGCGTCCACGGCCTGGATCGGGATTGAGAATGGACGGGCCGCGGTCCTCGAATGAAAATTTGAATAAAGAGAAAAACAGCACCATCAACAACAACAACAACGACAATGTCAATAACGTAGCAGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCATTGTTTAAGGAGTTGTTGAGTACTTCCATGGGAAGAGGGCTCTGTGGAGAAAGAGGGTTCAGTGGATTTGCTTTGCAGCCGATTCCATTGAGCTTCGGCGGCAGAGAAATGGCGGATGAGAGGTGGAGGAAACAACAGATTTTGGAACTGGAGGTTTATTCGAAGAGGTTGGAATTGGTTCAGGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGAGAGGCTAA 1152 54.34 MDPRNDAVFPDEDLDDDDESLDDDDDDDDEDLNDDPSPSTSSAAAALPPASAVVTIAIPSTAARAASLTPPPSIVSPSDLILRRRLDAAPPEPPEKKPLDESRKLFQRLWTDEDEIELLQGFLEYTMQRGTTHHHQNDTALFYDQIKSRLQLDFNKNQLVEKLRRLKKKYRNVVEKINSGKDFNFKSPHDQATFEISRKIWSNTARIGVEDNALDDDEPAPNPYANYMDVKNEEMMPNCAEKKPTPTPKSRKRPRPGSGLRMDGPRSSNENLNKEKNSTINNNNNDNVNNVAVAGLIEETVRSCLSPLFKELLSTSMGRGLCGERGFSGFALQPIPLSFGGREMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMRG 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26654257 26656599 - Sed0024518.1 Sed08g1289 723065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1289 383 MobiDBLite consensus disorder prediction 231 286 - -
Sed08g1289 383 MobiDBLite consensus disorder prediction 1 49 - -
Sed08g1289 383 MobiDBLite consensus disorder prediction 9 35 - -
Sed08g1289 383 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 106 202 IPR053932 -
Sed08g1289 383 Coils Coil 357 377 - -
Sed08g1289 383 MobiDBLite consensus disorder prediction 264 286 - -
Sed08g1289 383 Coils Coil 156 176 - -
Sed08g1289 383 PANTHER BNAANNG10740D PROTEIN-RELATED 16 380 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3305 Sed-Chr4:43358853 Sed08g1289 Sed-Chr8:26654257 5.90E-16 dispersed
Sed05g1995 Sed-Chr5:33274645 Sed08g1289 Sed-Chr8:26654257 4.50E-16 dispersed
Sed08g1289 Sed-Chr8:26654257 Sed14g1383 Sed-Chr14:22584744 5.40E-22 dispersed
Sed11g0255 Sed-Chr11:2259208 Sed08g1289 Sed-Chr8:26654257 5.80E-32 transposed
Sed06g0653 Sed-Chr6:6206068 Sed08g1289 Sed-Chr8:26654257 1.30E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39334 PF04504 DUF573 1.50E-34 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1289 - - - 0.0