Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g1289 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGACGACGACGACGAATCCCTCGACGACGACGACGACGACGACGACGAGGATTTGAACGACGATCCTTCCCCTTCCACTTCCTCCGCCGCCGCCGCCCTTCCTCCCGCTTCCGCCGTCGTCACCATCGCCATTCCCAGCACCGCCGCCCGTGCGGCCTCCCTCACTCCTCCCCCTTCGATCGTCTCCCCTTCCGATCTGATCCTCCGCCGCCGCCTCGACGCCGCCCCTCCCGAGCCGCCCGAGAAGAAGCCCTTGGATGAGTCCAGGAAGCTGTTCCAACGCCTCTGGACCGACGAGGACGAGATCGAGCTCTTGCAGGGCTTCTTGGAATACACGATGCAGCGAGGTACGACTCACCACCATCAGAACGACACCGCCTTGTTCTATGACCAGATCAAGTCCCGATTGCAGTTGGATTTCAACAAGAATCAGCTCGTCGAGAAGCTCCGGAGGTTGAAGAAGAAGTACCGCAACGTGGTCGAGAAGATTAACTCTGGTAAGGACTTTAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATCTCTCGCAAGATCTGGAGCAATACCGCCCGAATCGGAGTCGAGGACAACGCTTTGGACGACGATGAGCCTGCTCCGAATCCCTATGCCAACTACATGGACGTTAAAAACGAAGAGATGATGCCCAATTGCGCAGAGAAGAAACCGACGCCCACTCCAAAATCGCGCAAGCGTCCACGGCCTGGATCGGGATTGAGAATGGACGGGCCGCGGTCCTCGAATGAAAATTTGAATAAAGAGAAAAACAGCACCATCAACAACAACAACAACGACAATGTCAATAACGTAGCAGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCATTGTTTAAGGAGTTGTTGAGTACTTCCATGGGAAGAGGGCTCTGTGGAGAAAGAGGGTTCAGTGGATTTGCTTTGCAGCCGATTCCATTGAGCTTCGGCGGCAGAGAAATGGCGGATGAGAGGTGGAGGAAACAACAGATTTTGGAACTGGAGGTTTATTCGAAGAGGTTGGAATTGGTTCAGGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGAGAGGCTAA 1152 54.34 MDPRNDAVFPDEDLDDDDESLDDDDDDDDEDLNDDPSPSTSSAAAALPPASAVVTIAIPSTAARAASLTPPPSIVSPSDLILRRRLDAAPPEPPEKKPLDESRKLFQRLWTDEDEIELLQGFLEYTMQRGTTHHHQNDTALFYDQIKSRLQLDFNKNQLVEKLRRLKKKYRNVVEKINSGKDFNFKSPHDQATFEISRKIWSNTARIGVEDNALDDDEPAPNPYANYMDVKNEEMMPNCAEKKPTPTPKSRKRPRPGSGLRMDGPRSSNENLNKEKNSTINNNNNDNVNNVAVAGLIEETVRSCLSPLFKELLSTSMGRGLCGERGFSGFALQPIPLSFGGREMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMRG 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26654257 26656599 - Sed0024518.1 Sed08g1289 723065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g1289 383 MobiDBLite consensus disorder prediction 231 286 - -
Sed08g1289 383 MobiDBLite consensus disorder prediction 1 49 - -
Sed08g1289 383 MobiDBLite consensus disorder prediction 9 35 - -
Sed08g1289 383 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 106 202 IPR053932 -
Sed08g1289 383 Coils Coil 357 377 - -
Sed08g1289 383 MobiDBLite consensus disorder prediction 264 286 - -
Sed08g1289 383 Coils Coil 156 176 - -
Sed08g1289 383 PANTHER BNAANNG10740D PROTEIN-RELATED 16 380 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g1289 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3305 Sed-Chr4:43358853 Sed08g1289 Sed-Chr8:26654257 5.90E-16 dispersed
Sed05g1995 Sed-Chr5:33274645 Sed08g1289 Sed-Chr8:26654257 4.50E-16 dispersed
Sed08g1289 Sed-Chr8:26654257 Sed14g1383 Sed-Chr14:22584744 5.40E-22 dispersed
Sed11g0255 Sed-Chr11:2259208 Sed08g1289 Sed-Chr8:26654257 5.80E-32 transposed
Sed06g0653 Sed-Chr6:6206068 Sed08g1289 Sed-Chr8:26654257 1.30E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g1289 . 95 218 GeBP Transcription Factor Family AT3G04930 71.4 7.4e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39334 PF04504 DUF573 1.50E-34 CL0123 Sed TF